| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1395 |
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| Symbol | |
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| ID | 4921962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1604284 |
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| End bp | 1605066 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640162936 |
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| Product | VacJ family lipoprotein |
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| Protein accession | YP_001093523 |
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| Protein GI | 127512326 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2853] Surface lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0967319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.304519 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGTGTA AATGGATTGC GTTGAGTCTG CTATTGGTTG GTGCCCAGGC GATGGCACAA
ACAGACACAA GCGATGAGCG TGCAACGGAT AGCACCACAG CAGAAGTCAC CATTATCTAT
AACGATGAGC GCGATCCCCT GGAAGGCTTT AACCGCGCCA TGTGGGATTT CAACTATCAG
TTTCTCGACA AATATTTCTA TCGCCCCGTG GCTCATGGCT ACAATGATAT CTTGCCCAGG
CCGGTGAAGA CTGGTGTTAA TAACTTCGTC CTCAACTTCG AAGAACCCAG TTCTATGGTG
AATAACGCCC TGCAGGGCAA GTGGGGTTGG GCGGCCAATG CCGGCGGGCG GTTTACCATC
AACACCACCA TTGGTTTGTT AGGGGTGATC GATGTTGCCG ACATGATGGG CCTGCAACGT
AAACAGGACG AGTTTAATGA GGTGTTAGGC TATTATGGTG TGCCTAACGG TCCTTACTTT
ATGGCACCGT TTTTAGGCCC CTATGTGACT CGAGAATTGG CCTCAGACTG GGTGGATGGT
CTCTATTTTC CGCTGTCTGA GTTGACCATG TGGCAATCCT TGGCCAAGTG GGGGCTGAAA
AACCTACACA GGCGCGCATC GGCGATTGAC CAAGAAAGAC TTGTCGATAA TGCACTTGAC
CCCTACACTT TTGTTAAGGA AGCGTATTTT CAGCATCTTG ACTATAAAGT TTATGATGGC
GACATACCCG TGTCGACTGA TGATGACGAA TTGCTCGACG AATACATGAC AGAGCTTGAT
TAA
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| Protein sequence | MKCKWIALSL LLVGAQAMAQ TDTSDERATD STTAEVTIIY NDERDPLEGF NRAMWDFNYQ
FLDKYFYRPV AHGYNDILPR PVKTGVNNFV LNFEEPSSMV NNALQGKWGW AANAGGRFTI
NTTIGLLGVI DVADMMGLQR KQDEFNEVLG YYGVPNGPYF MAPFLGPYVT RELASDWVDG
LYFPLSELTM WQSLAKWGLK NLHRRASAID QERLVDNALD PYTFVKEAYF QHLDYKVYDG
DIPVSTDDDE LLDEYMTELD
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