| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1288 |
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| Symbol | |
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| ID | 4920545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1488381 |
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| End bp | 1489169 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640162829 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_001093417 |
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| Protein GI | 127512220 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAGCA AAAAGCCAAC ATTGACCCTG TTAGTCATCC TGACCTCGGC GCTGATGTCA
GGATGCGTGA CTGAAAGAAC TTACAGTGGC ACAGATGTGC CCGTTCAAGA GCGTACCTTC
GACAATGTTT CTGCCGCCCG CCAACGGGTG CAGCTGGGTC TGACCTATCT GCAGAAAGGC
AACAGCGAAC AAGCCAAGTA CAACCTGGAT AAGGCGCTCG AGTTTGCGCC TAACATCGAA
GATGTACACG TGGCATTAGC CTATTACTAT CAATCGGTTG GTGAATTAGA GCTGACCGAG
AAGGCGTATC GCAACGCCAT CAATGCCAGC GATGCCAGCG GCGATTCCAT GAATAACTTC
GGCGTGTTCC TCTGCCAGCA GGCAAAGTAC GATCAAGCCG AAGAGATGTT TCTTCGGGCG
GTAAAAATGC CCAAATACAC CCGTTCGGCC TCCAGCTATG AGAACCTGGG GATCTGTAGC
CGCAAGTCGG GTGACCTGCA AAAAGCACAA CGCTACTTCG AGATGGCACT TAACTATGAC
CCGCGTCGTG CCAACTCCCT ATTAGAACTG TCTGAGATCG AATTGGATCT GGGGAACTAC
TCCGCCGCCA AGAAAGGCTT GGCGCGTTAC CATAGAGTAG TGCCCGAATC GGCTCAGAGT
TTGGCGTTGG GAATTAAAAT TGAGCAAGGC CTAAATGACC CTGAAGCGAT GAGAAAATTT
GGCATTCTTC TCCTGGCTAA GTTTCCCGCT TCCAATGAGG CCAAGCAGTA TAGAGCAAGT
ATGCACTAA
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| Protein sequence | MLSKKPTLTL LVILTSALMS GCVTERTYSG TDVPVQERTF DNVSAARQRV QLGLTYLQKG
NSEQAKYNLD KALEFAPNIE DVHVALAYYY QSVGELELTE KAYRNAINAS DASGDSMNNF
GVFLCQQAKY DQAEEMFLRA VKMPKYTRSA SSYENLGICS RKSGDLQKAQ RYFEMALNYD
PRRANSLLEL SEIELDLGNY SAAKKGLARY HRVVPESAQS LALGIKIEQG LNDPEAMRKF
GILLLAKFPA SNEAKQYRAS MH
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