| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1175 |
|---|
| Symbol | |
|---|
| ID | 4922124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1358695 |
|---|
| End bp | 1359846 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640162709 |
|---|
| Product | SecC motif-containing protein |
|---|
| Protein accession | YP_001093304 |
|---|
| Protein GI | 127512107 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTAG CGAAAGAGTT CTACCGCCTG CCCCTGAGTT TCGATGTCGA GCGCCTGCAA
CAGGAGCTGG CCGCCTTCGA TGAAGATGAT TGGCGCGCCC ATCATGAGAG CTTTAAAGGC
AATTCGGCCA TCGCCCTTAT CTCGGTCGGC GGCAGCTTTA ACAACGAATT TAAGGGCCCT
ATGAGCCCCA CTCCTGCGTT GCTGCAGAGT TCCTATCTCC AGCAGGTGAT CGCCTCCTTC
GGCGAGGTAA TTGGCCGCTC TCGTCTGATG CGTCTAGCCC CCGGCTGCGA GGTGCCCCTG
CACAGCGACA TCAACTACCA TTGGCACAAC CGGGTGCGTA TCCATATCCC CATCGTCACA
GACGAGGCGG TACAGTTTCA CTGCGACGAT AAGCAGGTAC ACATGGGCGA GGGAGAATGC
TGGATTTTCG ACTCCTGGAA ATACCATAAG GTGATGAACA AGAGTGACAA AATGCGGGTG
CATCTGGTTA TCGACACAAT GGGCTCGAGT CGTTTTTGGC AAATGGTCAA CGAGGCATCG
CTGGCCTATG GCGACTTAGA TGACCCAAGC TTTAAGCCTA AACACCTAAG TTACACTCCA
GACAAATCTA CAGAGATCAT CACAGAGAAG GTGAACTTCC CCTTGGTGAT GCCCCCCAGC
GAGGTACGTC TGCTAACCCA GGAGCTGACT GCTCAGATCC AAAGCGCGAT CGGTAATGGC
TCAGAGGCTA GTCAAGCCTT TATCAAGTTA CTCAATGACT TCGCGCTAGA TTGGCAGGCG
CTATGGTCAC AATTTGGCGA TGATAAGGCT GGCTGGGACG CCTTCCATCG ACTGCGGCAA
CAAACTTTGG CGCAGGCGGC GCCGCTAGAG CAGCAGGTGA TGGTGGACAG TCAAACATCG
GCGATGAAGA TACTGGTGCA TCTGATCATG GGGCCGGCCA TGAGCCCTGA ATTGGCTCAG
GTAAATACAG CCGCGCCTCA ACCTACGTCA ACACCCAGCA CCCCCATATC GTCACAAACA
AGACCCACAC CATCCTCGCA AGCCGCTAGC GCAGTGAAGA TGCCGCAGCC CGAGCCTGGA
CTGACTCGCA ACAGCCCCTG CCCCTGCGGC TCTGGCAAGA AATATAAGCA GTGCCACGGT
CAGCTTAACT AA
|
|---|
| Protein sequence | MKLAKEFYRL PLSFDVERLQ QELAAFDEDD WRAHHESFKG NSAIALISVG GSFNNEFKGP
MSPTPALLQS SYLQQVIASF GEVIGRSRLM RLAPGCEVPL HSDINYHWHN RVRIHIPIVT
DEAVQFHCDD KQVHMGEGEC WIFDSWKYHK VMNKSDKMRV HLVIDTMGSS RFWQMVNEAS
LAYGDLDDPS FKPKHLSYTP DKSTEIITEK VNFPLVMPPS EVRLLTQELT AQIQSAIGNG
SEASQAFIKL LNDFALDWQA LWSQFGDDKA GWDAFHRLRQ QTLAQAAPLE QQVMVDSQTS
AMKILVHLIM GPAMSPELAQ VNTAAPQPTS TPSTPISSQT RPTPSSQAAS AVKMPQPEPG
LTRNSPCPCG SGKKYKQCHG QLN
|
|---|
| |