| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1170 |
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| Symbol | |
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| ID | 4921417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1350712 |
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| End bp | 1353222 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162704 |
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| Product | glycogen/starch/alpha-glucan phosphorylase |
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| Protein accession | YP_001093299 |
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| Protein GI | 127512102 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0058] Glucan phosphorylase |
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| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.170838 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCGA CAGCTAAGCC GGTGAAGTCC ACTAAAACGA GTAAGACTAG CAGCAAGCCT
GTGGTAAAGG TCGAAGCCAA GGCCGACAGC CTTATCTGCG ATCCCTGTGA GACCCTGGGG
GCCTGTTTCG AGCGTCACAT CGACAAGAGT CTGACCCCCA AGGAGCGTGA CGAGCAGGCG
CTGTTCTACG CCTTCGCTAT GAGCGTGAAA GATCAGATGC TGCCAAAGTG GCGCGCCACC
CGCCAGCTGG ATCGCGACAC GGGCAACAAG AAGGTCGCCT ACCTGTCGCT GGAGTTCCTC
ATGGGGCGGG CCCTTGGCAA TGCGCTGCTG AATCTGGATA TGAACGATGA GAGCGCCCAA
GTATTGAAAG ACTATGCTGT GGCGCTGGAG ACTCTGGAGG CTCAGGAGCA TGACGCCGGG
CTGGGCAACG GCGGCCTGGG ACGCCTGGCG GCTTGCTTCC TCGACAGCTG CGCCAGCCTG
GATCTCAATG TCACCGGCTA CGGCATAAGG TATGAGTACG GCATGTTCGC CCAGAAGCTG
TGTGACGGCT ATCAGGTGGA GCGCCCCGAC CGCTGGCTCA GGGACGGCAA CCCCTGGGAG
GTGAGGGTGC CGAGCCACAA CGTGACTGTG CCTTTCTTCG GCCATACCGA GTCCTATATC
GACCGCGACG GTAAGCGCCA ATACACTTGG GTGGAGACTC AGGATGTGCT GGCGGTGGCC
TATGACATCC CTGTGCCCGG CTATCGGAAC GAGCGGATAA ACACCCTCAG GCTGTGGAAG
TCTGAGGCCA CGGACGATTT CGATCTCGAG GAGTTTAACC AGGGGGATTA TACCGAGGCG
GTGGCCCGTA AGAACCTGGC GGAGCAGATC ACCATGGTGC TCTATCCCAA CGATGCCAGC
GAGAATGGTA AGGAGCTGAG GCTGCGCCAG CAATATTTTC TTTCTTCTGC CAGCCTGCAG
GATCTGCTCA ATACCTGGGT GAGCCAGCGC GGCCCCGACT TTAGGGATTT TGCCCGCCAG
CATGTGATGC AGCTTAACGA CACTCACCCC AGCGTGGCGA TCCCCGAGTT GATGCGCCTC
TTGATGGACA AGTATGGTCT GTCCTGGGAG CAGGCCTGGG ATATCACCAG CCAGACCATG
GCCTACACCA ACCACACCCT GCTACCCGAG GCGCTGGAGC GTTGGCCGGT GCGCATGTTC
GCCCACATGC TGCCCAGGTT GCTGGATATC ATCTATGAGA TCAACGCCCG CTACCTGGAC
ATGGTAGCTC ACCATTGGCC GGGCGATGGC GACAAGCTGC GAGCCATGTC GATCATCGAA
GAAGGCGATG AGCCCCATAT CCGCATGGCT TACCTGGCGA TCGTCGCCAG CTTCTCGGTG
AACGGCGTCG CCGGGCTGCA TACTCAGCTG TTAACCTCTG GCCTGTTTAA GGACTTTTAT
GCCTTGTGGC CCGAGAAGTT CAACAACAAG ACCAACGGCG TGACCCCGAG ACGCTGGCTG
GCTCAGAGTA ACCCGGCGCT GGCCGAGCTG CTGGGCAAGC GGTTAGGCGA AGGCTGGGTG
AAAGATCTTA GCCGTCTCAG CGCGCTCAAT GCCTTCACCG ATGACGAGGG GCTGCTCAAG
GCCTGGCAGG AGGTCAAGCA TGGCAACAAG CAACAGCTGG CCGAGCTGGT GGAGCAGGAG
TGCGACGTTC GCTTCGACCC TAAGATGATG TTCGATGTGC AGGTGAAACG CATTCACGAA
TATAAGCGTC AGCTGCTCAA TATCCTGCAT GTGATCCACC TTTATCACCA GATCCAGCAG
GGTAAACTCA CGGATATCAC CCCTAGGTGC GTGCTGATCG GCGGCAAGGC GGCCCCTGGC
TATGCCATGG CCAAGCTGTT GATTAAGCTC GCTAACAATG TGGCCCACAT GGTCAACTCG
GATCCCCTGG TGACGCCTTA TCTGCGTTTC GCCTTCTACC CCAACTATAA CGTCAGCGCC
ATGGAACGGA TCTGCCCGGC GACGGATCTC TCCGAGCAGA TCTCTACCGC CGGCAAGGAG
GCCTCGGGCA CGGGCAACAT GAAGTTTATG ATGAACGGCG CCCTCACCAT AGGCACCCTG
GATGGCGCCA ATATCGAGAT GCTCGAAGAG GTGGGCGAAG ATAACTTCTT CCTTTTCGGC
CTGAGGGCCG ACGAGGTGGA GGCTTTGAGG CCCCACTACG ATCCCCTGCA CTTTATCGCC
AAGTCACAGG CGCTGACCGA GGTGATGAAC CTGCTGGAGA GTGGCCACTT TAACCTGCTG
GAGCCGGGGA TCTTCGACCC CATCATCAAC AGCATACGTT GTCCTCGGGA TCCTTGGATG
ACCGCCGCCG ATTTCGAGTC TTACCGGCTC GCTCAGGTGC AGGCGGCCAA GGCCTACCGG
GATCCCCACC ATTGGACACA GATGAGCATA CGCAATACCG CCGCCAGTGG TCGCTTCTCC
AGCGATGTCA CCATTGGTCA ATATCGAGAC GAGATCTGGG GGATAGCCTA A
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| Protein sequence | MSSTAKPVKS TKTSKTSSKP VVKVEAKADS LICDPCETLG ACFERHIDKS LTPKERDEQA
LFYAFAMSVK DQMLPKWRAT RQLDRDTGNK KVAYLSLEFL MGRALGNALL NLDMNDESAQ
VLKDYAVALE TLEAQEHDAG LGNGGLGRLA ACFLDSCASL DLNVTGYGIR YEYGMFAQKL
CDGYQVERPD RWLRDGNPWE VRVPSHNVTV PFFGHTESYI DRDGKRQYTW VETQDVLAVA
YDIPVPGYRN ERINTLRLWK SEATDDFDLE EFNQGDYTEA VARKNLAEQI TMVLYPNDAS
ENGKELRLRQ QYFLSSASLQ DLLNTWVSQR GPDFRDFARQ HVMQLNDTHP SVAIPELMRL
LMDKYGLSWE QAWDITSQTM AYTNHTLLPE ALERWPVRMF AHMLPRLLDI IYEINARYLD
MVAHHWPGDG DKLRAMSIIE EGDEPHIRMA YLAIVASFSV NGVAGLHTQL LTSGLFKDFY
ALWPEKFNNK TNGVTPRRWL AQSNPALAEL LGKRLGEGWV KDLSRLSALN AFTDDEGLLK
AWQEVKHGNK QQLAELVEQE CDVRFDPKMM FDVQVKRIHE YKRQLLNILH VIHLYHQIQQ
GKLTDITPRC VLIGGKAAPG YAMAKLLIKL ANNVAHMVNS DPLVTPYLRF AFYPNYNVSA
MERICPATDL SEQISTAGKE ASGTGNMKFM MNGALTIGTL DGANIEMLEE VGEDNFFLFG
LRADEVEALR PHYDPLHFIA KSQALTEVMN LLESGHFNLL EPGIFDPIIN SIRCPRDPWM
TAADFESYRL AQVQAAKAYR DPHHWTQMSI RNTAASGRFS SDVTIGQYRD EIWGIA
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