| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1100 |
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| Symbol | lspA |
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| ID | 4923369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1269903 |
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| End bp | 1270415 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640162633 |
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| Product | lipoprotein signal peptidase |
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| Protein accession | YP_001093230 |
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| Protein GI | 127512033 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0597] Lipoprotein signal peptidase |
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| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.955311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.240164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCATCTA GCTGGAAAGA GAGTGGCTTA CGTTGGTATT GGGTAGTTGT ATTGGTGTTC
GTCGCCGATC AACTATCCAA ACAATGGGTA CTAGCCAATT TTGACCTGAG AGAGTCAATC
AACTTACTGC CATTTTTTAA TTTCACCTAT GTGAGAAATT ATGGTGCCGC CTTTAGCTTT
CTAAATGATG CCGGTGGGTG GCAGCGTTGG CTGTTTACCT TGGTTGCCGT CGGCTTTAGT
ACCTTGCTGA CCGTCTGGCT GCGTAAGCAA CCGAAAGGAT TATGGCGACT GAATCTGGCC
TATACCTTAG TGATTGGTGG GGCGCTGGGG AATTTAATTG ATCGCTTGCA ACATGGCTTT
GTGGTCGATT TTCTCGACTT TTATTGGAAG ACGAGCCATT TCCCCGCCTT CAACATTGCC
GATTCGGCGA TCTGTGTCGG TGCTGGACTC ATCATCTTGG ATTCGTTTAT TTCAGAGCGT
AAGCCAAATG GCGAAGACGT TGCAAAGGGG TAA
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| Protein sequence | MPSSWKESGL RWYWVVVLVF VADQLSKQWV LANFDLRESI NLLPFFNFTY VRNYGAAFSF
LNDAGGWQRW LFTLVAVGFS TLLTVWLRKQ PKGLWRLNLA YTLVIGGALG NLIDRLQHGF
VVDFLDFYWK TSHFPAFNIA DSAICVGAGL IILDSFISER KPNGEDVAKG
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