| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1084 |
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| Symbol | |
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| ID | 4921038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1248034 |
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| End bp | 1250070 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162617 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001093214 |
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| Protein GI | 127512017 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.48408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.101861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCTA GCGTGTTTAA GGATCTCTCT CAATCTGAAT TTATGGACTT TGGCCCGGCC
TTGATCGCCC AACTGGGGAA GTTACAGGGA CAGTTTATTC GCGGTGACGA TGTGCTCTTG
CCCCTGTGTC GTATCCTGGC CGATAGCAGC GGCGCCGAAT CTGTGATGAT TCTCTCCCGT
CGCCTGCTGG CCAGCGACGA GATGCCGGCC GATGTGACCT GCTGGTGTCG GGATTCCATG
CGTTATATCA CCCTGTGGCG ACAGGTGAAA GACTGGCCGC TGCTGGATGG CCAGCGGGGG
GCACACCAGT GGCAACGCTT CGTGGTTTGG CCCATCGAGG GGCTCGACGT CAATATCTTT
TTCTATCGCC CGGGCAAGGG CTGGCTGTCG TTTCTCACCT CCTATCAGAC CTTCATTGCC
GACAGCATCA GCGGCATGTT GCTGCAGCAG AGCCAGGATT GGCAGCAGAG CCGTAACGCG
CAGATCATCA AGTCTATCGA CACCCAGATG TACCAGTCTA TCGTCAGTAA TAGCGAAGAT
ATGATAGTAG TTGCGTCGCG TCAGAAGGGG ATGGCACCGG TGATCATGTA TGCCAATGCG
GCGGCGACCG CCATCAGCCA ATATCCGCGC AGTCAGCTTA TTGGCAAGTC GATCGAGCTC
TTCTTCGGCG ATCAGGACGA TAAGGCGCTG GAACTGCTGG AGGCGATTGA GCTGCGCCTT
GAGTTTACCG GCGAGCTGGT CTGCTCTACC GCCACGGGGG AGAAGGTGAT CCTGCATACC
CATCTAATTG CCCTCAACGA GCAGTATGAA GATGGCAGCC TGTTTACCCT AGTGGGCCGG
GACATCACGG AGCAGAAGCT GATGCAAAAT ACCATGGCCC GCACCCAGAA AATGCAGGCC
ATGGGTCAGC TGGTAGGGGG CGTGGCCCAC GATTTCAACA ACATCTTAGG TGTGCTCAAG
GGCAACCTGG AGCTGATGGA GCTTAAGGGC AAGGATGAGT CTATCGCCCG CTATCTGGCC
ACGGCGCTCA AGGCCTGTCA GCGCGGAACC GACCTGACGC GGCGTCTGCT GCAGTTTTCC
AGGCAGGAGC AGTTCAGTGC TCAGCCGGTG CAGGTCAACG AGGTGCTGCA GAGCTTGGAG
GAGCTGCTGG AAAAATCCTT AACCACCCAG GTGAGCCTCA ACATTCAGCC CCAGCCATCG
ATGCGGGATA TCTGTGTCGA TCGCGGCGAC CTCGAAGATG CGCTGATCAA TCTGGTGCTG
AATGCCAAAG ATGCCATGCA TGGGGAAGGA CAGATCACCA TAGTGACCGG TGAGCAGTAT
CTGTCTGGCT ATCTTCCCGG CGTGGGCAAT ACCGTCAGCA CAGATAACCG GGATTATGTC
TGGGTGTCGG TGATCGATCA GGGCGGAGGG ATCCCAGATA ACCTGCTGGA TAAGATCTTC
GAGCCATTTT TTACCACCAA AGATAAGAGC AAGGGGACCG GGCTCGGGCT CTCCATGGTG
TATGGCTTCG TCAAACGCTC CAACGGATAT ATGAGCATCA TGCGCACGGG TGCTGATGGC
ACTGAGATCC GCCTTTGGTT TCCGGCCATC AAGCCAGTCG AGCGGCAGAT TGAGCGCCAG
CACAGTCCGC TTGAGTATCC CAAGGTCGCG CACCCCATCA AGGTGCTTAT CGTCGATGAT
GAGCCGGATC TGCTCGAGGT GCTGTGCGAT TACTGTCAGA TGATGGGGAT GGAGGTGCTG
GCCTATACGG ATCCTCTGCT GGTCAAGGAG CAGTTTAAGG ATGGTATAGA TAATATAGAC
CTCATCATCT CAGATCTCTT GATGCCGGGG GGCATTAACG GCTATGAGCT GGTGACCGAC
TTGAGCGTGC ATCGAACGAT TCCTGTGCTG CTGATCTCAG GCTATGTCGG CGATGTCGGC
ATCAGCAGTC GGGAAGATCT GCCGTTTCAG GTGCTGCAGA AACCCTTCGA TATCCGCGCC
TTCGTACGTG GCCTCGAAGA GATAGGGATT GAGTTTGTAC AAGGAGAATT GCGATGA
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| Protein sequence | MDSSVFKDLS QSEFMDFGPA LIAQLGKLQG QFIRGDDVLL PLCRILADSS GAESVMILSR
RLLASDEMPA DVTCWCRDSM RYITLWRQVK DWPLLDGQRG AHQWQRFVVW PIEGLDVNIF
FYRPGKGWLS FLTSYQTFIA DSISGMLLQQ SQDWQQSRNA QIIKSIDTQM YQSIVSNSED
MIVVASRQKG MAPVIMYANA AATAISQYPR SQLIGKSIEL FFGDQDDKAL ELLEAIELRL
EFTGELVCST ATGEKVILHT HLIALNEQYE DGSLFTLVGR DITEQKLMQN TMARTQKMQA
MGQLVGGVAH DFNNILGVLK GNLELMELKG KDESIARYLA TALKACQRGT DLTRRLLQFS
RQEQFSAQPV QVNEVLQSLE ELLEKSLTTQ VSLNIQPQPS MRDICVDRGD LEDALINLVL
NAKDAMHGEG QITIVTGEQY LSGYLPGVGN TVSTDNRDYV WVSVIDQGGG IPDNLLDKIF
EPFFTTKDKS KGTGLGLSMV YGFVKRSNGY MSIMRTGADG TEIRLWFPAI KPVERQIERQ
HSPLEYPKVA HPIKVLIVDD EPDLLEVLCD YCQMMGMEVL AYTDPLLVKE QFKDGIDNID
LIISDLLMPG GINGYELVTD LSVHRTIPVL LISGYVGDVG ISSREDLPFQ VLQKPFDIRA
FVRGLEEIGI EFVQGELR
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