Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1061 |
Symbol | |
ID | 4924360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1223020 |
End bp | 1223808 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640162594 |
Product | cytochrome c assembly protein |
Protein accession | YP_001093191 |
Protein GI | 127511994 |
COG category | [R] General function prediction only |
COG ID | [COG4137] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000186655 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGATTT TTTCGGCTTC AGCCATTTTC TTCTACAGTA TCGCACTCGT CTTGGTCGTC AGCCGACTGT TTCATGCCGA TGGCCCTAAC CGTAAAGCCG TAGCCGCCTT CGCCGCCGTG GCCGTGGTGC TTCATGCCGC CGCCCTGTCT CAGGCCATCT TCACCGGTGA CGGTCAAAAC TTCAGTCTGA CCAATGTGAT CTCCATGGTG AACTGGATCA TCGCCTTCAC CTTCACCATC TTGATGTTCC GCCTCAAGGT AATCGTCGTC GTGCCCGTGG TCTATGCGTG CTCTGTCATC TCGGTGGCGC TGCTGTGGCT ATTACCGCCT AAATATATCA CCCACTTCGA GCTTTACCCC GAGGTGTTGG CCCACGTGGT GCTGTCGCTG ATGGCCTATA GTGCCCTAAT GATCGCCGCG CTTTATGCCA TCCAACTGGC GATGATTCAA AACAAGCTGA AGAAGAAGCA GCTGATGCTG AGCCCGGCGA TTCCACCGCT GATGACGGTA GAGAAGCAAC TTTATCACCT GGTGATCATC GGCGTGGTGC TGCTGAGTCT GTCGCTGGCG ACTGGCTTTA TCTTCCTCGA TGATATGTTT GCCGACGGCC AGGGCCATAA GGCGATCCTC TCTATCATTG CCTGGTTTAC CTATATCGCC ATGCTGGCGC AGCAGTACTG GGTAGGTTGT AAGATCCGCA CCGCCGTGGC CTATACTCTG ACTGGCGCAA CCCTGCTGTC ACTGGCCTAC TTCGGCGCCC GCATCGTCAA AGAACTGATC CTGCAATAG
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Protein sequence | MVIFSASAIF FYSIALVLVV SRLFHADGPN RKAVAAFAAV AVVLHAAALS QAIFTGDGQN FSLTNVISMV NWIIAFTFTI LMFRLKVIVV VPVVYACSVI SVALLWLLPP KYITHFELYP EVLAHVVLSL MAYSALMIAA LYAIQLAMIQ NKLKKKQLML SPAIPPLMTV EKQLYHLVII GVVLLSLSLA TGFIFLDDMF ADGQGHKAIL SIIAWFTYIA MLAQQYWVGC KIRTAVAYTL TGATLLSLAY FGARIVKELI LQ
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