| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0949 |
|---|
| Symbol | |
|---|
| ID | 4920901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1090458 |
|---|
| End bp | 1091126 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162481 |
|---|
| Product | redoxin domain-containing protein |
|---|
| Protein accession | YP_001093079 |
|---|
| Protein GI | 127511882 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA CACAAAATTC ACGCGCTGGC GCCCTGCTGA GCGCCCTACT CTTTACCCTG
ATGAGCCTGG CGCTCATAAC CCCCTCCGTA TCAGCTAAGC CGATAGCTGA AAGCCCGACA
TCGATCTCGC CGCTGCTGAA CGGTCAGACG GTGCCCTCGA TTCAGGTAAA GGATCTTAAG
GGCAAGTCGT TGGATCTGCA GCAGATGCTC CAGGAGAAGC CCAGTGTACT CTTCTTCTAC
CGCGGCGGCT GGTGTCCCTT CTGTAACGCC CAGATGGGTC AGCTGCAGGC GATCGAAGGC
GATCTCCTCA AGATGGGCTT TCAACTAATC GGCATCTCAC CCGATGCGCC AGAGGAGCTG
CGCGCCTCCA TGACCAAGAA CGATCTCAAC TACACCCTGG TCTCGGATGC AGACCTCAAT
GCCATGCGCG CCTTCGGCCT GGCCTATTTC ACCAGTCAGA CCATATCGGA TAGATACATG
GCCAAGATGC AGCTGAAAAA CAAGCTGTGG AAGAACGCCG CCGGCGAGTC CCGCCTGGTG
CTGCCGGTGC CCGCCGTCTA TATCACCGAC AAGACGGGAC TAGTGCACTT TCAATACATC
AACCCCAACT ACAAGGTGCG CGCCGAGCCT AAGCTGATCC TCACCGCGGC GAGCCTCATC
CCCCAGTAG
|
|---|
| Protein sequence | MTKTQNSRAG ALLSALLFTL MSLALITPSV SAKPIAESPT SISPLLNGQT VPSIQVKDLK
GKSLDLQQML QEKPSVLFFY RGGWCPFCNA QMGQLQAIEG DLLKMGFQLI GISPDAPEEL
RASMTKNDLN YTLVSDADLN AMRAFGLAYF TSQTISDRYM AKMQLKNKLW KNAAGESRLV
LPVPAVYITD KTGLVHFQYI NPNYKVRAEP KLILTAASLI PQ
|
|---|
| |