| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0942 |
|---|
| Symbol | |
|---|
| ID | 4920593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1083576 |
|---|
| End bp | 1084085 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162474 |
|---|
| Product | RDD domain-containing protein |
|---|
| Protein accession | YP_001093072 |
|---|
| Protein GI | 127511875 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.565346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAATA TTGAACATGC CAATTTTCCC AGAGCCGGCT TCTTTCGCCG CCTGGGCGCG
ATAGTGTACG ACCTGCTGCT GGCGGTCGCC GTCTACATGG TGGCCGGAGC CATAGGCTTC
GGTATCTTTA CCGCCCTTAC CAGCAGTGGC CTGCTGGCCA TGAATGGCTT CGAACATGTC
TCAGATCTGC TGAATGGCAC ACCGCTATAC AAGGGTGTTT ATCAGCTGTG GATCGCCTTC
TGCGTCGGCC TCTTCTATGT GCTGTTTTGG AGCTATGGCG GCCAGACCCT GGGCATGCGC
GCCTGGCGTT TGAAGATCCA ACATCCCAAC GGGCAAAGCC TGAGCATGAT CACCGCCACC
GCACGTCTCG TCTGGTCGCT ACTTGGCATA GGTAACCTGT GGATCTTGAT CAACGGCGAC
AAGCTGGCGC TACAGGATAT GATGACCCGC TCGGAAGTGG TGGTGCTCTC CAAAGAAGCC
AACCAGATGC GTAACTGGCA CGGCGTGTAA
|
|---|
| Protein sequence | MSNIEHANFP RAGFFRRLGA IVYDLLLAVA VYMVAGAIGF GIFTALTSSG LLAMNGFEHV
SDLLNGTPLY KGVYQLWIAF CVGLFYVLFW SYGGQTLGMR AWRLKIQHPN GQSLSMITAT
ARLVWSLLGI GNLWILINGD KLALQDMMTR SEVVVLSKEA NQMRNWHGV
|
|---|
| |