| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0929 |
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| Symbol | |
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| ID | 4921244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1061034 |
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| End bp | 1064111 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640162461 |
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| Product | Ig family protein |
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| Protein accession | YP_001093059 |
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| Protein GI | 127511862 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCCC ATATGATCAC CACTAAACCT CTCTGTTGGT TGGCTGCTCT CGGCCTACTG
TCTTCATTTC AATCTTACGG CGTTGTCTAT AGCGAAGCTC AAACGGCGGC TATCACCGAA
AATATGCAGC ATGCACTGGC CGTTGAAAAT ACAGGCATAG TTAATGAAGG TCATATTCAT
GACATTTATC AATTCTATGC ATCGAATAAG CTAGCAGTAG GCATAGACGA TCATTACTTG
CATACTTTTT TTGCAAAGGA TGACAACACC ATAAGCTATA TGGGTAAGCA AAGCATCGGT
GAAGAGGACT ACTATAGCAA CCGCGACAAT ATCTCTTTGA GTCCTGATGC TAAGTTTATG
TATTTAAAGA AAAGAAAAGA CAATATCTAT CAGATCGAGG TGATGAGCTT AGATTCTGAG
AATAAAGAGT GGGAAACCAA GTTTACCTAT ACCAGCATAG GGACTCAGTC TATCGATTAT
GGTACCCAGA GCCAGATCTC TGACGATGGA AACTATCTCT TTATGTGGAG TAGCTATCAA
AGAAATCTAT CTATTGCGAA GAGAGATAAA GTGACTGGCG AGCTTAGCCC TTTAATACTG
GTCAAAAGCG ATAAACTCCC CTCAAGAGTG GAAGGAGTTG AATATGATGA AGCCAACCAG
ACTTTGCTCA TTTTTGGCCA AGGCAGCCCC TATGACTCGA CCTCGGCATT AATTGCACTC
AAAATCGACT CAATAAATGG ATCGGCAACC GAAATTGCCC GACTCCCACT GAGCGGCACC
TACCAAAATA TTGATTACAT CCAATTTGAT CCTAATACCA AGAATATATT TATCACTGAG
AGTGGTAATA TTAACGTCTA CCACTTAGAT GAAACCAATA ACACGTTAAC GACCAGCTAC
AGTGATTCTA CCTACAATAC TTTCAATACC TATGTAAGCA GTAAGTCAGT CAGGTTAATT
GACGGCAAGT TATTTGTTCA GCAAAGTAAT AATCTTGCCA AAATTTATCG CTTTAATGGC
GGTACTTCAC CCTCTTTTTC ACTGGAAGAC ACAGTCACCA CCAGTGTCTA TTTGAATCAA
CTGGCAATCG CAGATGGACT CGGCTGGAGA ATGATGAATG AAAAGGCCGA ACTCTTTGCC
AACAGCTCCA CGGCTTATGA CTTTGTCAAA AAAGATACCC TCGCCGATGG TCAACAAAAT
ATGCCAATAT TTGGTAATTC AAGAACCCAA ATCGCCTTTA TCGAGTCACT CGATATCATT
GTTGCTATTG ATAGACAAGG CATCTATTCA ATGCTCGCCG ACGCAAGCGC TCAAACCCCA
CTCTATTCTA AGACATGGGA ACAATTGGGT TTCGATATTA ATGCATCGCC TTTCATAGAT
AGGGTCGTCG TTAAAGGCAA TAACATACTC CTCGCGGGGA GATATTTTAA CTTTACACCG
AGTTCGCAAA ATGACCGCTT TATGGCCCTT AAGCTCGATG ATAAAGGGGT CATTTCGACA
GAGGTGAAAC CACTGACCGT ATCGGGAAAT CCATTTTACT ACCAAAGTAA CAACAATTCT
GCCCAGTTTG ACCCGAGCAG TGGAGTCGCG GCATTTCTGT CACAAGATGG CGGCTATGCA
TTTTTTAGCC TGGATGCGGA CAATAATCCA ACCTTTATCG ACACCTTAGA CTCAGCCCTC
TTTAACACTT ATTACTACTA TAGGAGCATA GGCTTCGTCG ACGGAAAACC CTATGTCTGG
GACAGAGAAA ACGCTAAATT CTATTTCGTC GATGTCGATG TTGCTAACAA GGACGTCGAT
CTTGGAGATG GCATAGATCT TTCGGGTTCG GTCCCCAACG ACGCAGTGAT CATCACAAAC
GGCAAGAACA TCTATTTTAT AAACGACTCC GCAGTATCGA GTTATAAGAT CAATTACGAT
CTCAGCCTGT CATTTATGTC GACCTCTTTT GTTTCAGGGC TTTATTCCAA TGACTTAACC
TTCATATCTG AAGATTACGT CGTAAACGCC AATTATAATA GTCTGAACAG CTATGCTATC
GACAGACAAA GCGGCGCCTG GAAAAAGCTA GAGAGCATCA TGGCTGAGGA TTTAGGTGTG
TCAGGCTTAA ATACCAGCAA GATAGCCTAT GGCGACTCGG TAAAACAAAA CCTGATCTTT
AACGCGAACA TTAATTACTC CACCAACATA CTAATGCGTG CCGATCTCGC GACCAGCCCC
GTTTTGACCT CTGCGCTCTT GCCCCTACTA GCGAATGAAG GTGAGAAAGT CGAACGTAAT
ATCAGCGAGT TTGTATTTGA CGCCGACAAT GATGATCAAC TCATCTTTAG TTCTGCCAAC
CTACCTTCTG ACGCCGAACT AACTGAGTCG GGCGTGCTCA CCTATGACAC GACAAGCCAT
GACTCGGGTG AACTCGATAT CCTGGTGACC GACAGTAATG ACATGACACT CAGCATAAGC
TTGCCTTTCT TGGCTAACAG GGCACCAGTC GTTGAAGCCA TAGACACCTA TTGGATCAAT
CCAGGAGAGA ACATCACCTT TAACCTCGCC GATGCGGTAA GCGATTCAGA GGGCCAAGAC
TTCAGCTTTA CAAAGGATGA AGGCTCGGCG CTTGAGGTGA ATGCCCTCGG CATGGCTTAC
GGGCAACTCA CCCAGGCAGG TGAACATCAG GTACTCGCCA CAGTTACAGA CACCTTAGGT
GCCAAGGCCT CTGTGTCTGC TACCGTCCAG GTGAATTCAG CCCCAACAGC TTCTGGCCTA
GGTGCGGTGT CACTCAAAGC TGGCGAAGCC GTCTCTCGCG ATTTAGCCAG CGCATTTGCC
GATGCAGATG GTCATACCCT TAGCTTCTCA GCCATTGGCC TACCATCGGG TATCAGTCTG
AGTGCACAAG GCCAACTCAG CGGTAGCAGC AAGGTCACAG GTAAATCAAG CGTAGTGGTA
ACGGCTACCG ACACCATGGG ACTGAGCATT AGCGCAAACC TCTCAATCGA TATCAAAGAA
GAGAGTTCAG GTGGCGGTAG CCTGGGGTAC CTGGTCTTGC TGCTCCTCCC ATTGGCCATC
CGCAGAAAAT TCCATTAA
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| Protein sequence | MLPHMITTKP LCWLAALGLL SSFQSYGVVY SEAQTAAITE NMQHALAVEN TGIVNEGHIH
DIYQFYASNK LAVGIDDHYL HTFFAKDDNT ISYMGKQSIG EEDYYSNRDN ISLSPDAKFM
YLKKRKDNIY QIEVMSLDSE NKEWETKFTY TSIGTQSIDY GTQSQISDDG NYLFMWSSYQ
RNLSIAKRDK VTGELSPLIL VKSDKLPSRV EGVEYDEANQ TLLIFGQGSP YDSTSALIAL
KIDSINGSAT EIARLPLSGT YQNIDYIQFD PNTKNIFITE SGNINVYHLD ETNNTLTTSY
SDSTYNTFNT YVSSKSVRLI DGKLFVQQSN NLAKIYRFNG GTSPSFSLED TVTTSVYLNQ
LAIADGLGWR MMNEKAELFA NSSTAYDFVK KDTLADGQQN MPIFGNSRTQ IAFIESLDII
VAIDRQGIYS MLADASAQTP LYSKTWEQLG FDINASPFID RVVVKGNNIL LAGRYFNFTP
SSQNDRFMAL KLDDKGVIST EVKPLTVSGN PFYYQSNNNS AQFDPSSGVA AFLSQDGGYA
FFSLDADNNP TFIDTLDSAL FNTYYYYRSI GFVDGKPYVW DRENAKFYFV DVDVANKDVD
LGDGIDLSGS VPNDAVIITN GKNIYFINDS AVSSYKINYD LSLSFMSTSF VSGLYSNDLT
FISEDYVVNA NYNSLNSYAI DRQSGAWKKL ESIMAEDLGV SGLNTSKIAY GDSVKQNLIF
NANINYSTNI LMRADLATSP VLTSALLPLL ANEGEKVERN ISEFVFDADN DDQLIFSSAN
LPSDAELTES GVLTYDTTSH DSGELDILVT DSNDMTLSIS LPFLANRAPV VEAIDTYWIN
PGENITFNLA DAVSDSEGQD FSFTKDEGSA LEVNALGMAY GQLTQAGEHQ VLATVTDTLG
AKASVSATVQ VNSAPTASGL GAVSLKAGEA VSRDLASAFA DADGHTLSFS AIGLPSGISL
SAQGQLSGSS KVTGKSSVVV TATDTMGLSI SANLSIDIKE ESSGGGSLGY LVLLLLPLAI
RRKFH
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