| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0901 |
|---|
| Symbol | |
|---|
| ID | 4923391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1021390 |
|---|
| End bp | 1023681 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640162433 |
|---|
| Product | transketolase, central region |
|---|
| Protein accession | YP_001093031 |
|---|
| Protein GI | 127511834 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.542357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGATA GAGCTATTGC CCTCGACAGG CAATTTGTCG AACGAGTATC ACAGCAAGAT
TTTTTAGAGA TAGAGCAGGG CTGGTGCCAT ACCCGCCTGG GGCTCAGTGA CGCCGATTTC
GTCGGCATCT TCGAGTCACA GATGAAGAGC CGCCTGCTGG ATCTCGAGTC CCGTAAGATG
CGCGCCCGTA ATCAGGGCTT CTACACCATA GGCAGCTCGG GTCACGAAGG CAACGCCGCC
TGCGCCGCGG CCCTGCGCCC GACCGATATG GCATTTCTGC ACTATCGCAG CGCGGCCTTT
ATGATAGAGA GGGCGCGCCA GGTGCCCGGC GAGACCTCCC TGTGGGACAT GCTGCTTTCT
TTTGCCGCCT CCAGCGAAGA CCCTATCTCC GGCGGGCGTC ACAAGGTGCT CGGCAGTAAG
CGGCTGATGA TACCACCACA GACCTCCACC ATAGCCTCGC ATCTGCCCAA GGCGGTGGGG
GCGGCCCTGA GCATTCCGCT GACGCATAGG TTAGATATCG ACAGCGCCTT GCCCGAAGAC
AGCCTGGTGT TCTGTAACTT CGGCGACGCC TCGGCCAACC ATGCCAGCGC GCAGACGGCG
ATCAATGCCG CCGGTTGGGC CGCCTACCAG CAGGTGCCGC TGCCGCTGCT GTTTGTCTGT
GAAGACAATG GCATAGGTAT CTCTACCGCG ACCCCAAACG GCTGGATAGC CGCCAACTTT
AAAGACCGCG CCGGCATCAA GTATTTCTAC TGTGATGGGC GGGATCTGCT GGACTGCTAT
CGGGTCAGTC GTCAGGCGGC TGAGTATGCC AGGGTCAAGC GCAAGCCCGT CTTCTTGCAT
GTCAGAACCG TGCGTCTGAT GGGCCATGCC GGCAGCGACG CCGAAATCGC CTATCTCAGC
AAACAGAAGA TCTTCGATAA CGAGGCTCAG GACCCATTGC TGCTCAGTGC CAAGCAGATC
ATCGAAGCCA AGCTGATGAG CCCGGACGAG ATAATTAATC AGTATCAGAC GCTCAAGGCG
CGCATCGCCG CCATCGCCAT GGTGGCGGTT GAGCGGCCAA AACTAACCAG CGCCAAGGCG
GCGATGGCGG CGGTGATCCC GCCCGTCAAT GACAAGCCCT TGACTCACCA TAACCTGACC
GATGAGGCCT TCGCTCAGCT CTTTAGTGCG GACAAAAACT CTCTGGGTAA GCCGCTACAC
ATGGGCAAGC TTATCAACAT GACACTCACT GAGTTAATGG CGCGCCAGCA GAACATAGTG
GTCTGCGGTG AGGATGTGGG CAAGAAGGGC GGTGTCTATC ATGTGACCTC GCGCCTGGTG
GAGCGTTTCG GCCCCAACCG GGTGATCAAT ACCCTGTTGG ATGAGACCTC AATCTTAGGC
CTGGCCATAG GTATGGCCCA CAACGGCCTG CTGCCGATTC CGGAGATCCA GTTTCTTGCC
TATGTCCATA ACGCCGAGGA TCAGATCCGC GGCGAGGCGG CGACCCTGCC GTTTTTCTCC
AACGGTCAGT TTAGCAACCC CATGGTGATC CGCATCGCCG GCCTGGGTTA TCAGAAGGGT
TTCGGCGGTC ACTTCCATAA CGACAACTCA CTGGCTGTGT TTCGTGACAT TCCCGGCCTC
ATACTGGCCT GTCCCTCCAA CGGCGCCGAT GCCATGGGGA TGCTGCGGGA ATGCGTGCGG
CTGGCCGAGC AGGAGCAGCG ACTGGTGATC TTCTTAGAGC CTATCGCCCT GTATATGACA
CGGGATCTCC ATGAGGAGGG AGATGGCCTC TGGAGTCATG ACTATTGTCC TCAGGAAAAG
GCCAAAGCCC TGCCCTATGG TGAGCTGGGG GTCTATGGCA AGGGTAAGAC GCTGGCCATC
CTCAGCTATG GCAACGGCTA TTATCTCAGC CGTCAGGCCG AGCGCGAGCT ATCTAAGCTC
GGCATCGACT GTCGGGTGAT CGACTTGCGC TATCTCATCC CCCTCAACGA GGAGGCGATC
ATCGCGGCGG TGAGCGAGTG CGAACATCTG TTGATCGTCG ATGAGTGCCG CCGCAGTGGC
TCGGTAAGCG AGGCGATAGT GACCTGCGTC CATGAGCGCT TGGGGGATCT CGCGCCGCAG
ATGGCCAGGC TCACCGCCGA GGATTGCTTT ATCCCGCTGG CCGAGGCGGC GACTCTGCCA
CTGCCGAGCC GCTCGCAAAT TGTCGAGGCT GCCCTGGCCC TGGTTGGTGA GCAGGCCCTG
GTTGGCGAGC ACGCCGTTGA CGATGAGGGC AGTGAAACCA TCCAGGATGC GGGAGTGAGA
CAAGTCTTAT GA
|
|---|
| Protein sequence | MEDRAIALDR QFVERVSQQD FLEIEQGWCH TRLGLSDADF VGIFESQMKS RLLDLESRKM
RARNQGFYTI GSSGHEGNAA CAAALRPTDM AFLHYRSAAF MIERARQVPG ETSLWDMLLS
FAASSEDPIS GGRHKVLGSK RLMIPPQTST IASHLPKAVG AALSIPLTHR LDIDSALPED
SLVFCNFGDA SANHASAQTA INAAGWAAYQ QVPLPLLFVC EDNGIGISTA TPNGWIAANF
KDRAGIKYFY CDGRDLLDCY RVSRQAAEYA RVKRKPVFLH VRTVRLMGHA GSDAEIAYLS
KQKIFDNEAQ DPLLLSAKQI IEAKLMSPDE IINQYQTLKA RIAAIAMVAV ERPKLTSAKA
AMAAVIPPVN DKPLTHHNLT DEAFAQLFSA DKNSLGKPLH MGKLINMTLT ELMARQQNIV
VCGEDVGKKG GVYHVTSRLV ERFGPNRVIN TLLDETSILG LAIGMAHNGL LPIPEIQFLA
YVHNAEDQIR GEAATLPFFS NGQFSNPMVI RIAGLGYQKG FGGHFHNDNS LAVFRDIPGL
ILACPSNGAD AMGMLRECVR LAEQEQRLVI FLEPIALYMT RDLHEEGDGL WSHDYCPQEK
AKALPYGELG VYGKGKTLAI LSYGNGYYLS RQAERELSKL GIDCRVIDLR YLIPLNEEAI
IAAVSECEHL LIVDECRRSG SVSEAIVTCV HERLGDLAPQ MARLTAEDCF IPLAEAATLP
LPSRSQIVEA ALALVGEQAL VGEHAVDDEG SETIQDAGVR QVL
|
|---|
| |