| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0890 |
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| Symbol | |
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| ID | 4920744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1010164 |
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| End bp | 1011300 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162422 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001093020 |
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| Protein GI | 127511823 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.969653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTGC TACTCATTCT GACCTATACC GCCATCTGCA TCGCCATCTT TAAGATCTTC
AAGATACCCT TAAACAAATG GACAGTGCCC ACGGCGATTC TCGGCGGCAT AGTGATCGTC
GGCGCCCTGG TGCTCTTGAT GAACTACAAC CATCCCTATA CTCCCTATGC CCGTCAGGTG
TTTGCGACCG TGCCCATTAA CCCTGCGGTG CGCGGCTTGG TGACCAGTGT CGAGGCGAAA
CCCAATGTGC CCCTGAAGAA AGGGGACGTG CTATTTCGTA TCGATCCTGC CCCCTTCGAG
GCAGTGGTGA TGCAAAAGCG CGCGGCCCTG GCGGCGGCCG AGCTGGAGGT GCCTCAGCTG
GAGGCGGCCT GGCAGACGGC GCAGGCCAGT GTGGAGCGCG CCACGGCGGA CAGAGACCGC
ACTAAGTCGG CGTTCGAGCG TTACGAGAAG GGACGCAAGC GCGGCGGGGC CAATTCGCCC
TTCACCGAGC TTGAGCTGGA TAACAAGCGT CAACTCTACA TGGCCTCAGA GGCGCAGCTC
ACCGCGGCGC GTTCCGAGGA GTTGAGAGTC AGGCTCGCCT ATGAATCTAA CGTCGATGGC
GTCAACACCA AGGTGGCCGG GATTAGGGCC GAGCTGGACA AGGCGCTGTA CGATCTCGAG
CACACTGTGG TGCGGGCTCC GGCCGATGGC ATAGTGACTC AGATGGCACT GCGCCCAGGG
GTGATTGCCG TGCCTATGCC GCTGCGCTCC CTGGTGAGCT TTATTCCCGA TGAGGATCGC
TACTTTGCCG GTGCCTTCTG GCAAAACTCT CTGCTGCGAC TCAAGGAGGG GGATGAAGCC
GAGATGATCT TAGACGCAGC GCCGGGTCAG GTGTTTAAGG GACGGGTGGC CAAGGTGCTA
CCTGCTATGG CCGAGGGCGA GTTTCAGTCT CAGGGTTCGC TCATCTCTTC CATGGCGCTG
CTGCCTAGGG GGCGCGCTAT CGTCTTGATC GAGCTCGACG ATCACGAGGC GAAACGTAAT
TTTCCTGCCG GGGTATCGGG TCAGGCGGCC GTCTATACCG AGCACTTCTC CCATGTGGCG
GTAATGCGCA AGGTGTTGCT GCGTATGCAG GGTTGGTTGA ACTATCTGTT CCACTAA
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| Protein sequence | MDLLLILTYT AICIAIFKIF KIPLNKWTVP TAILGGIVIV GALVLLMNYN HPYTPYARQV
FATVPINPAV RGLVTSVEAK PNVPLKKGDV LFRIDPAPFE AVVMQKRAAL AAAELEVPQL
EAAWQTAQAS VERATADRDR TKSAFERYEK GRKRGGANSP FTELELDNKR QLYMASEAQL
TAARSEELRV RLAYESNVDG VNTKVAGIRA ELDKALYDLE HTVVRAPADG IVTQMALRPG
VIAVPMPLRS LVSFIPDEDR YFAGAFWQNS LLRLKEGDEA EMILDAAPGQ VFKGRVAKVL
PAMAEGEFQS QGSLISSMAL LPRGRAIVLI ELDDHEAKRN FPAGVSGQAA VYTEHFSHVA
VMRKVLLRMQ GWLNYLFH
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