| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0814 |
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| Symbol | |
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| ID | 4921317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 938276 |
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| End bp | 938824 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162347 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001092945 |
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| Protein GI | 127511748 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.572557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCTTTA AGCCTTACGG CTATCTGAGC CAGTTTGTCG GCGAGCGGCG TAAACGTAAG
CCTTTACTTG GTGAGCTGGC CAACTTCCCA ACGGGCATCA TGGCGATCGG CCGGCTGGAT
CATGACTCTG AGGGATTACT GCTATTGACC ACAGATGGCA AGACCAGCCA CGCTGTGCGC
AGCAAGTCGA TCGAGAAAGA GTATTACCTG CAGCTCGATG GCGAAATCAC AGAGCAGGCG
ATATCGAGCC TCTGCGAGGG GGTCGAGATA GGCATCAAGG GCGAGAAGTA TCGCACCCTA
CCCTGCCGCG CGCGCCGCCT CGACCAGGCG CCAGACCTAC CGCCGCGGGG ACGCAAGATA
AGAGACGCCC GCCACGGGCC TACCAGCTGG CTGGCGATCA CCATTACCGA GGGCAAGAAT
CGTCAGCTGC GTAAGATGAC CGCCGCCGTG GGCTTTGCCA CCCTGAGGCT GGTGCGGGTG
CGCATAGGCG ATATCCGCCT GGGCACGCTG CAGCCAGGCG AAGTTAAATC GCTCGCGACA
CTAGGCTAA
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| Protein sequence | MIFKPYGYLS QFVGERRKRK PLLGELANFP TGIMAIGRLD HDSEGLLLLT TDGKTSHAVR
SKSIEKEYYL QLDGEITEQA ISSLCEGVEI GIKGEKYRTL PCRARRLDQA PDLPPRGRKI
RDARHGPTSW LAITITEGKN RQLRKMTAAV GFATLRLVRV RIGDIRLGTL QPGEVKSLAT
LG
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