| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0623 |
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| Symbol | |
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| ID | 4923138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 707888 |
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| End bp | 708574 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162156 |
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| Product | phage shock protein A, PspA |
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| Protein accession | YP_001092754 |
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| Protein GI | 127511557 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.865812 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCATAC TGAACAAGAT CCTCACCGCA TTTCGCGGTG GCGCCACCGA AGTTGGCCAG
AGTATCGTCG ACGCCAACTC GACACGCATC TTCGAACAAG AGATCCGTGA CGCAGAGAAA
CACCTGACCA AGGCCAAGCG CGAGCTGACC GACGTCATGG CCAAAGAGAT GCAAGCCAGC
CGCGAAGTGG ATCGCCTAAA GCGCGCCATC GCCGAACACG AAGGCTACGC GACTCAGGCG
CTGGAGAAGG AAAACGAAGC CTTGGCCCTG GAAGTGGCCG AGAAGATCGC TCAGCTTGAG
CAAGAGCTTT CTGAACACCA GAGCGCCAAC GACAGCTTTA GCGCCCACGC CGCCCGTCTA
AAAGACCTGG TGCGCAAGAC AGAGCGCCAG CTGGCCGACT ACCAACGTCA GCTCAGCATG
GTCAAGACCA CGGAAAGCGT GCAGAAAGCC ACGGCGACCA TTACCGATTC CTTCGCCAGC
AGCAACTCTA AACTGTTGAA CGCCAAGGAT TCGTTGGAAC GCATCAAGGC ACGTCAGCAG
CAGTTTGACG ACCGTCTCAA GGCCGCCGAA ACCCTGGCCG ACGAGAACAG CGACAAGTCG
CTACAGGCCA AGCTTGCCGA GGCGGGTATC GGCGAGCAGA AGTCCAATGC CAACGCGGTA
CTGGATCGCC TCAAAGCCCG TAAATAA
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| Protein sequence | MGILNKILTA FRGGATEVGQ SIVDANSTRI FEQEIRDAEK HLTKAKRELT DVMAKEMQAS
REVDRLKRAI AEHEGYATQA LEKENEALAL EVAEKIAQLE QELSEHQSAN DSFSAHAARL
KDLVRKTERQ LADYQRQLSM VKTTESVQKA TATITDSFAS SNSKLLNAKD SLERIKARQQ
QFDDRLKAAE TLADENSDKS LQAKLAEAGI GEQKSNANAV LDRLKARK
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