| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0536 |
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| Symbol | |
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| ID | 4923273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 609087 |
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| End bp | 610076 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162065 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_001092667 |
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| Protein GI | 127511470 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00246353 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.884869 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCTG CCACTATGCC AACTGCTATT AATCGTACCT TCTCCATTGC GCCCATGCTC
GATTGGACCG ACAGGCATTA CCGCTATTTC GCGCGCCTGA TGTCTTCCGA GTTGCTGCTC
TATACCGAGA TGGTGACGAC CGGGGCGATC ATTCATGGCA AGGGCGATTA TCTGGCCTAT
AACCAGGAGG AGCATCCGCT GGCGCTGCAG CTAGGGGGAT CCAATCCTGA GGATTTGGCT
AAGTGTGCCA AGCTGGCGGC AGAGCGCGGC TATGATGAGG TCAACCTCAA TGTGGGCTGC
CCGTCGGATC GCGTGCAGAA TGGCCGTTTC GGTGCCTGCC TGATGGCCGA GCCTGATCTG
GTGGCTCAGT GCGTGGCGGC GATGAATGAG GTGGTGGATA TTCCGGTAAC GGTGAAGACC
CGCATCGGCA TCGACGAGCA GGACAGCTAT GAGTTTCTTA CCGAGTTCGT CGACAAGGTG
AGCGCGGCTG GCTGTGACAC CTTTATTATT CATGCCCGCA AGGCCTGGTT GCAGGGGCTG
AGTCCCAAGG AGAACCGCGA GATCCCCGAG CTCGACTATG ACAGGGTGTA TCGTCTCAAG
CAGGATTACC CTCAGCTGAG CATCTCCATC AATGGTGGGG TCAAGACACT TGAAGAGTGC
GGCGAGCACC TCAAACAGCT AGACGGCGTC ATGGTGGGCC GCGAAGCCTA TCAAAATCCT
TATCTGTTGG CTCAGGTGGA TCAGCAGCTG TGCGGCCTGG ACAAGCCAGT GCTGAGCAGA
GATGCCGTTT TGGAGAATAT GATTCCCTAT ATAGAGAAAC ATCTAGTGTC CGGTGGCCGC
CTGAATCATA TTACCCGTCA CATGACAGGT TTGTACCAGG GCGAGGCGGG TTCGCGCGCC
TGGCGTCGTT ATTTGAGCGA GAATGCTCAT AAGCCTGGTG CCGGTATCGC CGTGGTGCAT
GAGGCCAGAG CCAGCATGGA ACTCAAATAA
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| Protein sequence | MSSATMPTAI NRTFSIAPML DWTDRHYRYF ARLMSSELLL YTEMVTTGAI IHGKGDYLAY
NQEEHPLALQ LGGSNPEDLA KCAKLAAERG YDEVNLNVGC PSDRVQNGRF GACLMAEPDL
VAQCVAAMNE VVDIPVTVKT RIGIDEQDSY EFLTEFVDKV SAAGCDTFII HARKAWLQGL
SPKENREIPE LDYDRVYRLK QDYPQLSISI NGGVKTLEEC GEHLKQLDGV MVGREAYQNP
YLLAQVDQQL CGLDKPVLSR DAVLENMIPY IEKHLVSGGR LNHITRHMTG LYQGEAGSRA
WRRYLSENAH KPGAGIAVVH EARASMELK
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