| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0485 |
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| Symbol | |
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| ID | 4922570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 542808 |
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| End bp | 543425 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162014 |
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| Product | cold-shock DNA-binding domain-containing protein |
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| Protein accession | YP_001092616 |
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| Protein GI | 127511419 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGAG GCACCCTGGT TCGCTGGAAC GATGACAAAG GCTTTGGCTT CATCAAGCCG
AACACGCCCA ATGCCCAAGA TGTGTTTATC CATATCTCGG CCCTGAAACA GATGGCCAGA
AAGCCTGTGG TGGGCGACGA GATCATCTAC CAAAGCCAGC AACAGAGCGA TGGCAAGATA
AAGGCTGTCA AGGCCAGCAT TGAAGGCGTC GCCGTGGTTT CAGGCATAGC TTCGGGGAGG
GCTTCTGGCC TCGCGAATAA ACCGACTCGC CCGCAACATA GAGACCATAC GCAGTCGTCC
CACTATTCTC ATCGCCGCTC CGGCTCACGC CTGCAGCGGA TGATCTTCAT TATCATACTC
GTGAGTATTG GCAGCTTCGC CATTAAACAA TATCAGGCAC TCAACGCCAC GCCTGTCGCC
AGCTTCGAAG AGCTCCCCGC CGTAGAGGCT CAGGAGTGGC AACCGGCCAC CCCCAAGTTT
CGCTGCGAAG CAGGCAAGAT ACATTGCAGC CAGATGAGCT CCTGCCAGGA AGCCAAATTC
TACCTCCGCA ATTGTCCCGG CACAGAAATG GATGGTGATC ATGATGGCAT TCCCTGCGAA
AGACAGTTCT GTGGCTAA
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| Protein sequence | MERGTLVRWN DDKGFGFIKP NTPNAQDVFI HISALKQMAR KPVVGDEIIY QSQQQSDGKI
KAVKASIEGV AVVSGIASGR ASGLANKPTR PQHRDHTQSS HYSHRRSGSR LQRMIFIIIL
VSIGSFAIKQ YQALNATPVA SFEELPAVEA QEWQPATPKF RCEAGKIHCS QMSSCQEAKF
YLRNCPGTEM DGDHDGIPCE RQFCG
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