Gene Shew_0456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0456 
Symbol 
ID4921696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp506342 
End bp507226 
Gene Length885 bp 
Protein Length294 aa 
Translation table11 
GC content59% 
IMG OID640161985 
Producthypothetical protein 
Protein accessionYP_001092587 
Protein GI127511390 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.496683 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGATGA TTCTACGCTC CACACAGCTT AGCCTTGCCC TACTCGCTCT GATGAGCCAG 
GCCCTAATTC CCGCTATGGC CATAGCCCAG CGCAGTACCA CACCGGATTA TGATTACCTG
CCGCCTGCCG AGGTGGCAAA GATCACCCTG GGCGATGCTG AGCAAGCTGT ATTGGTGCGT
CCCTGGCAGG GGCGAAATCA ATATGGTGCG GCAGTCTTAT TAGGAGATTT AGGCGAGGAC
GCCGACCCAG AGGGACTGCT AGCCTTTCTC AGGCGCGAGC TGACGCCCAA GGGCTGGGCG
ACCCTCAGCA TAGGCGCGCC CCAGGGCGCT GCTCAGCCTA ATCATATTAC CGACGCAGGA
GAGATCCCTA AGCCGGGCGA GCAGCAGCTT AGCCAGAAGA GTAATCAGAG TCTGCCTAAA
TACAGCCAGG AGGATTGGGC GGCGCTGCGG GAGCAACAGA AGACTGTGAT GAGTCAGACC
CTGGGTCAGC TCGACTCTCT CGGCAAGAGT TATCCGGGTA AACGCATACT GATAGTTACC
GGCCAGAGCG CCGGCCTGGT GATCGAGATG CTGACGACTT CGGCGCTGCC CAGCCCAGAT
CTACTGGTAG TGATCAACCC TTATCTTGAA CAGGATGAGG AGAATCGGGA TCTGCCGGGC
AAGCTGGCTA AGCTCGAGCT GCCGGTATTG GACATTCAAT CGCCGGACGG ACTGCCCGCC
TCCCTGGCGA CCCAAAAGGC CCGCAAGGCC CTCTCCCCCA TGGGGGAGCC GCTGCGGTAT
GAGCAGCAGC AATTGGCGTT AAACTTGGAT CAGCCCAGCG CCTGGCAGGA TGTCCTGACC
CTGGTACAGG GCTTCGCCCA GCGTATCCTG CGGGCCTATC CATAA
 
Protein sequence
MPMILRSTQL SLALLALMSQ ALIPAMAIAQ RSTTPDYDYL PPAEVAKITL GDAEQAVLVR 
PWQGRNQYGA AVLLGDLGED ADPEGLLAFL RRELTPKGWA TLSIGAPQGA AQPNHITDAG
EIPKPGEQQL SQKSNQSLPK YSQEDWAALR EQQKTVMSQT LGQLDSLGKS YPGKRILIVT
GQSAGLVIEM LTTSALPSPD LLVVINPYLE QDEENRDLPG KLAKLELPVL DIQSPDGLPA
SLATQKARKA LSPMGEPLRY EQQQLALNLD QPSAWQDVLT LVQGFAQRIL RAYP