| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0387 |
|---|
| Symbol | |
|---|
| ID | 4923186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 437735 |
|---|
| End bp | 438391 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640161916 |
|---|
| Product | MSHA biogenesis protein MshJ |
|---|
| Protein accession | YP_001092518 |
|---|
| Protein GI | 127511321 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC AGATAGTCCG CTGGGGCGAA GCCTTCGATC AACTGAGTCA GCGCGAGCGG
ATTATGATCA CCGTGGCGGT CGTGGTGGTG ATCGGCATGT TGCTCTATCT GCCGCTCGAG
TCTCTGCTGA CCCAGAGCAG CCGCGTGCAG AGTAATATCA AGGCCTTAAC CGCAGAGAAC
CGGATCTCAG AGCAACAGAT TGACCTGTAT CAGCAGACCC TGGCGAGCGA CCCCGATCAG
GAATATCGTC AGCGTCTGGC TGGGCTACAA CAACAAGCCA AGGATCTCGA CCAGCAGCTG
TCGTTTCAGA TGGTCGACAT GGTGCCCGCC GACAAGATGC CGACCATGCT CGGCGAGTTG
CTGGGTCGGG TGCAAGGGAT ACGCCTGCAA AGTTTCGAGT CTCTGGCGCC TAAGCCACTG
CTGGCATTAG GAGATGAGAA CAAGCTTAAC CTCTACAGCC ACGGCATCAA GCTGGCGTTC
GAGGGAGATT ACTTTGCCAC CCTCAAGTTT ATCGAGGCGG TCGAGGCCAT GCCCAATAAG
CTCTATTGGC GCCAACTGGA TTATGTGGTG GGCGATTATC CCAAGGCCGA GGTGACGTTA
GAGGTCTACA CACTCAGTAT TAACAAGGAC TTTATCAGTG TTGCGAATCA AGATTAG
|
|---|
| Protein sequence | MKQQIVRWGE AFDQLSQRER IMITVAVVVV IGMLLYLPLE SLLTQSSRVQ SNIKALTAEN
RISEQQIDLY QQTLASDPDQ EYRQRLAGLQ QQAKDLDQQL SFQMVDMVPA DKMPTMLGEL
LGRVQGIRLQ SFESLAPKPL LALGDENKLN LYSHGIKLAF EGDYFATLKF IEAVEAMPNK
LYWRQLDYVV GDYPKAEVTL EVYTLSINKD FISVANQD
|
|---|
| |