| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0312 |
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| Symbol | |
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| ID | 4924283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 338680 |
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| End bp | 340860 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640161840 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001092443 |
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| Protein GI | 127511246 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAAGCTT CAGCGTCTCC AAAAACTGAA CAATGGACAG TTTCAGCCTC CCAAAGAGTG
ACTGTCGATC CCTTGTTAGA CAGTTTAGTG TTATTGACAG AATACTTCGG CAGCCCCTGC
TCCAGCGAGT CATTAGCCGC TGGCCTACCG CTGTCGGGGA GCATTTTGAC ACCAGAACTT
GTGCCTCAGG CTGCCGGTCG AGCCGGTTTA GCAGCCAAGC TCACCCGTAA GGGACTGGAT
CAGATCTCGC CTATTCTTCT GCCTTGTATC TTGCTCCTCA AAGATAAGAA TGCCTGTCTA
TTAAGAGAGA TCGACATAGA CAAAGACAGG GCCGTCATTC AGCTACCAGA AACCGGTGGT
GAGGAAGAGC TCAGCATTGA GGCGCTCGAG GCCATGTATG TCGGCTATCT GTTCCTCGTG
AAGCAGCAAT ACCGTGGCGA CATGGGCTTA GATCTGCATC TACACGACAG TCGCACTCAC
TGGCTTATTC AGACCCTGAA AGATTCAGCG CCTATCTACC GCGACGCCCT AATCGCCTCA
GTGCTGGTTA ACCTGTTTGC CCTGGTATCC CCCCTGTTTA TCATGAACGT TTATGACAAG
GTGGTGCCCA ACCTCGCCTT CGAGTCCCTA TGGGTGCTCG CCATTGGCGC CGGCATCGCC
TATATCTTCG ACTTAATTAT GCGACAACTC AGGGCCTACC TGATCGACGT CGCCGGCAAG
AAGGTCGATA TCATAGTGTC ATCGCGGCTT TTCGCTAAGG CTATCGGCAT ACCGCTAGAG
AAGCGTTCCC CCAGCATAGG CGGCATGGCG CGGCAACTAG GCGAGTTCGA CAGCATACGC
GAGATCTTAA CCTCGGCAAC CATCACCACC TTGGTCGATC TGCCGTTCGC GCTGTTTTTC
ATGTTGATCA TCTATATCGT CGCCGGCGAC CTGGCCATCA TTCCTGTGAT CGGCGGCTGT
ATCATTATCG GCTATACCCT ATTGATGCAA CCCAGGCTCA AAGCGGCTAT CGAAGAGAGC
AACAAATTCT CCAGCCTAAA ACACGGTCAT CTTATCGAGT CCCTGGCCTC CATCGAGTCG
ATAAAATCCA GTGGCGCCGA AGGCTTAGTG CAGAAGAGCT GGCAGCAGAT GATAGGTCAT
ACCGCCAACT GGCAGTTGAA GGTGAAGAAG ATCTCCACCT CGGTCACCAA CGTCGCCAAT
TTTACCGTGC AGCTTTCAGT GGTCTGCGTG GTGATCTTAG GGGTCTATCG TGTCGCCGAT
AACGACATCT CAATGGGCGG CATTATCGCC GCGGTTATCC TGTCGAGCCG CGCCATCTCA
CCCATGGCGC AGTTGGCAGG CCTGATGACC CGAGGCAACC ATACCGCCAG CGCCCTAAGA
CAGCTTGATC AGATCATGAC CCAAGAGGAT GAGTTTGAAA ATAAAGGCCA TCTGGTCAGC
AAACATCGTC TGAAAGGGCA GATCAATGCC GATCATGTCA GCTTTAATTA CCCAGGCTCT
GAGCGACCCG TGCTGCACCC CATGTCGCTG TCGATCGCAC CGGGTGAGCG CATCGCCATC
ATAGGACGCA ACGGCTCGGG CAAGAGTACC CTGGCCAAGC TGTTGGTAGG CCTCTACCAA
CCGACCAAAG GTAGCCTGCG CTATGACGGA TTGGATTCGG CGCAGATCCA CCCGACGGAT
CTGCGTAGAA ACTTCGGTTA CCTGCCACAG GACATCACAC TGTTCCACGG CACGATTCGC
GACAACATAT TGTTCGGTAC CCGTCAGGTC ACCGAGCATC AACTGATCCG TGCGGTACAG
CTCTCTGGCG TCAACCAGTT TACCGATATC GAGACCGAAG GCTTAGATCA ACAGGTCGGC
GAGGGGGGGC AATCCCTCTC CCGTGGTCAA CGCCAAACTA TCGCGCTGGC GAGGGCCACC
TTGAATGACC CACCGGTACT CCTGATGGAT GAGCCGACCG CCAGCCTGGA TGCCCGCGCC
GAGAAGCAAT TTATCCGCGC CATGAGAAAT GTCTCTAAGG AGCGCACCCT GCTGCTGATC
ACCCACAAGA TGCACCTGCT CAACTTAGTG GACCGCATCT TGGTATTAGA TCGTGGCCAT
CTGGTGGCCG ACGGTCCGAA GGAGCAGGTG CTCAACCAGC TCGCCAAGGG GCTGTTATCG
GGAGGGCCGA AGAGTGAGTA A
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| Protein sequence | MQASASPKTE QWTVSASQRV TVDPLLDSLV LLTEYFGSPC SSESLAAGLP LSGSILTPEL
VPQAAGRAGL AAKLTRKGLD QISPILLPCI LLLKDKNACL LREIDIDKDR AVIQLPETGG
EEELSIEALE AMYVGYLFLV KQQYRGDMGL DLHLHDSRTH WLIQTLKDSA PIYRDALIAS
VLVNLFALVS PLFIMNVYDK VVPNLAFESL WVLAIGAGIA YIFDLIMRQL RAYLIDVAGK
KVDIIVSSRL FAKAIGIPLE KRSPSIGGMA RQLGEFDSIR EILTSATITT LVDLPFALFF
MLIIYIVAGD LAIIPVIGGC IIIGYTLLMQ PRLKAAIEES NKFSSLKHGH LIESLASIES
IKSSGAEGLV QKSWQQMIGH TANWQLKVKK ISTSVTNVAN FTVQLSVVCV VILGVYRVAD
NDISMGGIIA AVILSSRAIS PMAQLAGLMT RGNHTASALR QLDQIMTQED EFENKGHLVS
KHRLKGQINA DHVSFNYPGS ERPVLHPMSL SIAPGERIAI IGRNGSGKST LAKLLVGLYQ
PTKGSLRYDG LDSAQIHPTD LRRNFGYLPQ DITLFHGTIR DNILFGTRQV TEHQLIRAVQ
LSGVNQFTDI ETEGLDQQVG EGGQSLSRGQ RQTIALARAT LNDPPVLLMD EPTASLDARA
EKQFIRAMRN VSKERTLLLI THKMHLLNLV DRILVLDRGH LVADGPKEQV LNQLAKGLLS
GGPKSE
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