| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0229 |
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| Symbol | |
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| ID | 4923937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 242897 |
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| End bp | 243706 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640161753 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001092360 |
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| Protein GI | 127511163 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.343329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCGC CAAAACTCAG AATATTGTTA TTGATCATGC TCTTGCAGCT GCCGCTTTCG
TCATGGGCCG AGGCAAGCGA TCTCAATATC GTCTATCACG ACTTCGCTCC CTTTAGCTAT
GAGGACAATC GAGGTCGGGC CCAGGGGATA TTGGTGGAAC TGACCCAGGC GATCTGCCTG
CAGTGGCCGG GACGTTGCGA CATCTCGATT CGTCCCTATC GCAGAGCGAT GCACATGTTT
TCCAGCGGCG AGGCTAAGGG GATCTTTCTC GGCTGGAACC GGGAGCGGGC CGAGTCCATG
TGGTTCTCCC TGCCGCTGGT GCAGACGGAA TACGGCTTCT ACACCTTAAA TGACTTTCCG
ATCACCGACC TGAGTCAGCT GGCGGGTAAG GTGATTGGCG TCTATGGCCC CTCCAACACC
TACACCTCGC TCATGCGCCA ACAGGAAAAA CTCAAGCAGC TGTCGCTGCC GCCCCTGCTC
ACCGACATCT ATCCCCAGGG CGATGCCTTG CCGGTTCGCA TGCTGCAGAA ACGCAGGTTC
GACGCCTACT ATGTCAACAA GGATGTGGGC CGTTTCTACG CCGGACAGGT TGGCTTGAGC
CAGCTGCATT ATCTCAGCGC CGAAAGGGCG ATTCTGTATT GTGTCGCCTT CAACAAGGCC
TTCACCGACA GCGAGACAGT GCGCCAGTTT AATCACCTGT TTCTCAGGCT GTTACAGGAA
GGACGCCTGG ATAAGATCTA CCAGAAATAT CAGATGCAGC CGATCCGCTT GCCACAAACA
GATTTTACGC CCAAGAGCAT GCCTTATTAA
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| Protein sequence | MISPKLRILL LIMLLQLPLS SWAEASDLNI VYHDFAPFSY EDNRGRAQGI LVELTQAICL
QWPGRCDISI RPYRRAMHMF SSGEAKGIFL GWNRERAESM WFSLPLVQTE YGFYTLNDFP
ITDLSQLAGK VIGVYGPSNT YTSLMRQQEK LKQLSLPPLL TDIYPQGDAL PVRMLQKRRF
DAYYVNKDVG RFYAGQVGLS QLHYLSAERA ILYCVAFNKA FTDSETVRQF NHLFLRLLQE
GRLDKIYQKY QMQPIRLPQT DFTPKSMPY
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