| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0227 |
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| Symbol | |
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| ID | 4923967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 239550 |
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| End bp | 241454 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161750 |
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| Product | LppC family lipoprotein |
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| Protein accession | YP_001092358 |
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| Protein GI | 127511161 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.238094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAAAAA GACTGAATAC AACTAAATTT ATCTCCGCCG CTGTGTTGGC CACAGTATTA
TTCGGTTGTG CCACGGCGCC AACCCCAGTG AAAGAAACCA GCACCCAAGT TTCTTTGGTG
AATGCCACCC AAAGCCCTGC AGAGTACCTG GCGGATGCCA AGCAGGCTTC CGATGCCGAG
CAGAAGAACC GTCTGATGCT GCTCGCCGCC CACGCCTTTA TCAACCAAGG CGACACGGGC
AATGCCAGCA AGACGCTAGC GGCCGTAAAA CCTAGCCTGG TCAACAAGCC AGAGATCCTG
GCCGAGCACA GATACCTGAG TGCCAGAGTA CTGGAGCAGA CGGCCAACTA TGATCAGGCC
CTGGCTCAAC TCAATTATCC CAGCAAGTGG CGACTCGCCA ACTGGCAGAT GGTCTCCTAC
CATCAACTCA AGGCGCGTCT GTTTCAGCTG AGCAAATCGC CAATCGAGCA GGCCAAGGAA
CTCACTCTGC TGGCGACTTA TCTGCCGAGC ACCGAGGCGA GTGAAGTCAA CGACGAGATC
TGGGGCATAT TGCAGCCCCT GCACGAGCAG ACACTGCTGG CCTTTAGTCA GGATAGCAGC
AACCCCATCT TTGCCGGCTG GCTGCAGCTG GCCTATATCG CCAAGCATTA TGCCATAGAC
CCTCAGCAAT TGGTGCAGCA ACTGGGTAAC TGGCAGCAGG ACAACCCAGG CCATCCGGGC
GCCAAGAAGC TGCCGACGGA TCTCGAGCGC GCGCTGAATA CCAAGCCCTA CAAGCCAAAG
AAGATTGCCG TCTTGCTGCC GCTCACCGGC CCCAGAGCCG CCATCGCCGA CACGGTCAAG
CAGGGGATCA TCTCCAGCTA CCTGACCAAT CCGGACGACT CGGTATCGGT TAACTTCTTC
GACACGGCCC AAGGCGCCGA GCTTGCACAG CAGCAGGCGA TTGCCGCCGG TGCCGATTTC
ATCATAGGCC CACTGTTACA GTCTGAGGTG GAGAGCCTGA TGCAGGCGGA GCAGAAAGCC
AGCCAGCAAG CCAATGGTCA ACAGCAGCCT GGCGCTCAAG CACAGGCTCA AGCTCAAGCT
CAAGCTCAAG CTCAAGTACA GCCTAAGGTG CCCCAGCTGT TTCTCAACCA TGTGGACAGC
TTCACGCCAT CGAACGACCA GTTCTTCTTC GCGCTCTCAC CCACCGACGA GGCGGTAGAT
GCCGCGCAGA AGCTCTATAA CGACGGCATA GAGAAGCCGC TGCTGCTCGC CAGCGACGAC
GCAGTCGGTC GCCGCATGGC CGAGGCCTTT AACGGTAAGT GGCAGGAGCT CACCCATGAA
GCGGCCGAGA TCCACTACTA CAAGCGCGGC GACGAGATGA AGGTCACTGT GCAGAAGTCC
CTTGGGGTGA TCGACAGTAA GGAGCGTATC GCCCGTATCA AGACGCTACT GGGCAATAAG
ATCGAGGCCG ACTTTAGATC CCGCCGCGAT ATCGACGCCA TCTATATGAT CGCCAGCAGC
CAAGATCTGC CGCTGCTCAA GCCCTTTATC GACGTGAATT TCAGCGTGTT TGCCGAGCCG
GTGCCGTTAT ACACCACCAG CCGCAGCCGT ATCGAGAGCC AATCGCGCAC CGCCGCCCAG
GAGCTGAATA ACCTGACCAT CAGCGATATT CCCTGGTTGA TCGAGACTAA CGCCGAAACC
GCCGAGGTCG CCCGTCTCTG GCCGACCTGG GGTAACAGCC AGAAACGCCT GTATGTGATG
GGTTTCGATG CCCTGCAACT GGTGAGTAAG CTGGCGCAGA TGCGCGCTTT GCCCGGCTAC
CAGTACTCGG GTCGCAGCGG CCTGCTTTCC GTGTCGCCCG ATGGTACGAT TAACCGTCAG
CTCAGCTGGG GACGTTACCA GCGAGGCAAT TTGAGACCCC TATGA
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| Protein sequence | MLKRLNTTKF ISAAVLATVL FGCATAPTPV KETSTQVSLV NATQSPAEYL ADAKQASDAE
QKNRLMLLAA HAFINQGDTG NASKTLAAVK PSLVNKPEIL AEHRYLSARV LEQTANYDQA
LAQLNYPSKW RLANWQMVSY HQLKARLFQL SKSPIEQAKE LTLLATYLPS TEASEVNDEI
WGILQPLHEQ TLLAFSQDSS NPIFAGWLQL AYIAKHYAID PQQLVQQLGN WQQDNPGHPG
AKKLPTDLER ALNTKPYKPK KIAVLLPLTG PRAAIADTVK QGIISSYLTN PDDSVSVNFF
DTAQGAELAQ QQAIAAGADF IIGPLLQSEV ESLMQAEQKA SQQANGQQQP GAQAQAQAQA
QAQAQVQPKV PQLFLNHVDS FTPSNDQFFF ALSPTDEAVD AAQKLYNDGI EKPLLLASDD
AVGRRMAEAF NGKWQELTHE AAEIHYYKRG DEMKVTVQKS LGVIDSKERI ARIKTLLGNK
IEADFRSRRD IDAIYMIASS QDLPLLKPFI DVNFSVFAEP VPLYTTSRSR IESQSRTAAQ
ELNNLTISDI PWLIETNAET AEVARLWPTW GNSQKRLYVM GFDALQLVSK LAQMRALPGY
QYSGRSGLLS VSPDGTINRQ LSWGRYQRGN LRPL
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