| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0211 |
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| Symbol | |
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| ID | 4923395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 225979 |
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| End bp | 226494 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640161734 |
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| Product | pilus assembly protein, PilQ |
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| Protein accession | YP_001092342 |
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| Protein GI | 127511145 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3168] Tfp pilus assembly protein PilP |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00519508 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0081665 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAGC TACCTTTGCT AATCGTGGGC TTGATGCTAG CAGGTTGTAT GGGGGATCGC
AGCGATCTTG AGTTATTTGT GACGACCACT AAGGCTCAAC ATGTCGCGCG CGTGCCCCCC
TTGAAGGAGC CCCCTAAGTT TGAACATTTT GCCTATCAGG CAGAGTTGAT GCGCAGTCCC
TTCGTACCGC CTTCGAGAGA ACTAACCGAA GAGGTGGTCG ATACGACCAA AGATTGTCTA
CAGCCAGATC TGCAACGCCG CAAGGGCCGT CTAGAAACCT ATGCGCTGGA CAATTTAAAG
ATGCGCGGTA CCTTGAGCGA AGATAAAAAT ATTTGGGCCT TAATCGAGAC TAATGATGGC
AGCGTATATC GTCTAGGTGT GGGCGAATAC GTAGGTTTGT ATCACGGGCG AATTGCTAAA
GTTACACAGC AAATGGTCGA AATAGTTGAA TTAATTCCAG ATGGGACAGG TTGCTGGGCT
GAAAGAATGA GCAACATGGA ACTGACTGGT GAATAA
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| Protein sequence | MKKLPLLIVG LMLAGCMGDR SDLELFVTTT KAQHVARVPP LKEPPKFEHF AYQAELMRSP
FVPPSRELTE EVVDTTKDCL QPDLQRRKGR LETYALDNLK MRGTLSEDKN IWALIETNDG
SVYRLGVGEY VGLYHGRIAK VTQQMVEIVE LIPDGTGCWA ERMSNMELTG E
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