| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4444 |
|---|
| Symbol | |
|---|
| ID | 5369295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009661 |
|---|
| Strand | - |
|---|
| Start bp | 64695 |
|---|
| End bp | 66221 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640819240 |
|---|
| Product | TraB pilus assembly family protein |
|---|
| Protein accession | YP_001355462 |
|---|
| Protein GI | 152998541 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC TCCTAGACTA CTTCAAAAAA GACCCCGAAG CCGACTTTGA GCAAGGCAGT
GCGTTAAATG AAGCCAATAA AAAACGCAAT TGGGTGATTG CAGGGGTGGG GGCCACGGTA
CTCGGCGCCC TCTATTTAGC GGGCGACGCC TATATGTCTG CCCCAAAACG TGCCCCTGAA
ACCGCAGCGG GCAATCCTAT CGATTTTGGT GCCGTGATTG ATAAAGATTT CACCGAGAAA
GACAATCAGT CTGCGCTCAC CGCACAGCAA ATCGCATTAG ATAAGCAGCA GAAAGCGATT
GATAAAATGC TGAAAAGCAT GGAAGCCATT GAGCGCAGCA ATGAAGCTAA TCGCCTTGAT
TTAAAGCGTA ATTTAGAGAC GTTCCAACTG ACCGTGTCTG AAAAAATTGA TGATAAGATT
AATGCCGCTA CCGCAAATGC AATGCAGCAT AGCAATGTCA CCGATGAATT TTCGACAGAG
GGCATTGATG CATCAGCCTA TCTCGTTAGG CAAAGCACAC GCTACTTGGG TGAACAAACG
CTGCCGCCAC GCCCGAGCGT GGGTGACGGA CAAAGCGGGT ATGCTGCCCC CTATCAAGGC
GGCGCTATCC CGCCACCTGC AACCCAAAAT GGCATCGATT CCTTTGCACT AAATTGGGAA
TCGCCAGAAG AAAACCTACC CAAAAAACGC ACCCCTGAGA ACTATGTTCC TGCAGGTTCA
TTTGTGACAG CTGTTGTTAC TGGCGGCGCA GATGCCAATG CGGGTGTGAA TGGCCAAGGC
GATACCGTAC CAATGGTATT CCAAACCATT AACCAAGGTG TACTACCCAA CGGCAAGCCC
TCGAAACTCA ATAACTGCAC GATTTTGGGC GCAGCTTACG GCGAAATATC ATCGAGTCGC
GGCATTGTGC GCACCACTCG CCTCAGCTGT ATTTTTGAAG ATGAAATCAT CGACATTCCC
GTCGAGGCGA CCGTATTTAA CTATGGCCGC AACGGTATTC GCGGTACTGC CATTATGAAG
AACGGCAAAA TCGTTCAGAT GGCAGGGATT AGCGGTATTT TGACGGGCAT TGGTGAGACA
GGTAAAGCAC TGAGCCAAAC CACATCGAAC TCAGCGCTAG GGTCAACCTC AAGCGTCAAT
GGCAGTGATG CACTGCTCAA CTTAGCCGGC AGTGCCAGTT CAAGCGTGGG TAGCAAGCTC
GCGGATTACT ACATCAAATT AGCTGAGCAA TACCACCCGA TTATTGAGCT CAATCCGGGC
AATACCGTCA ACATCGTTTT CCTGAAAGGC TTCCCACTCG ATCCGGTTGG CATTCAAGAA
TACGAAGAAG CGCTAGCGCA ACAAGCCCAA AATCCTGTCA GTGCCACAGC GCAAATCCTC
AACACTATCA GCAACCCACT TTTAGAACAG ATGCCAGGGA ATATTAAGCC GCAGGCCCAA
GGCACAAACA CGCCTACACC ACAGCAGCAA TATAACCAAC AAGGCCAGCG CCCCCCTGTT
AACTCAGCCT TTGGCCGTGC GAATTAA
|
|---|
| Protein sequence | MKQLLDYFKK DPEADFEQGS ALNEANKKRN WVIAGVGATV LGALYLAGDA YMSAPKRAPE
TAAGNPIDFG AVIDKDFTEK DNQSALTAQQ IALDKQQKAI DKMLKSMEAI ERSNEANRLD
LKRNLETFQL TVSEKIDDKI NAATANAMQH SNVTDEFSTE GIDASAYLVR QSTRYLGEQT
LPPRPSVGDG QSGYAAPYQG GAIPPPATQN GIDSFALNWE SPEENLPKKR TPENYVPAGS
FVTAVVTGGA DANAGVNGQG DTVPMVFQTI NQGVLPNGKP SKLNNCTILG AAYGEISSSR
GIVRTTRLSC IFEDEIIDIP VEATVFNYGR NGIRGTAIMK NGKIVQMAGI SGILTGIGET
GKALSQTTSN SALGSTSSVN GSDALLNLAG SASSSVGSKL ADYYIKLAEQ YHPIIELNPG
NTVNIVFLKG FPLDPVGIQE YEEALAQQAQ NPVSATAQIL NTISNPLLEQ MPGNIKPQAQ
GTNTPTPQQQ YNQQGQRPPV NSAFGRAN
|
|---|
| |