| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4281 |
|---|
| Symbol | |
|---|
| ID | 5370803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 5107264 |
|---|
| End bp | 5108127 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640832544 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001368458 |
|---|
| Protein GI | 153002777 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAA TCTTTCGTAT CAGCCTCACC CTCATTGTGG TCGCGGTTGC AGGTATCGCG
GGACATTGGA TATGGTCACA CTACCTTTAT TCTCCTTGGA CCCGCGACGG CCGAGTTCGC
GCCGAAATCA TTACCATAGC GCCAGATGTG TCCGGTTGGG TGAACCAACT GAATGTAAAA
GACAATCAAG TCGTCAATAA GGGTGATGTG TTGTTCACTG TGGACGATAC CCGCTACAAG
GCCACAATTG CCGAATTGAA TGCCAAAGCG GAAAGTCAAA AATTGGCATG GGAACTGGCA
AAACATAAGT ACAAACGTCG TATCGGTTTG ACCAATGACA ACTTAGTTAG CAAAGAAACC
TTCGACGAAG CCTTTATCAA TACTGAACTG GCAAGAACCA GTTATGAACT CGCACAGGCG
CAATTGAACA CCGCCAAAAT TGACTTAGCG CGAACGCAAA TTCACGCTCC CGAAAATGGC
ACTCTGATCA ATTTAAGTCT GCGTAATGGT AACTATGTCA GCAAAGGCAA CTCGGTATTT
TCGCTGGTCA AACAAGACTC CCTCTATATC ACAGGCTATT TTGAAGAAAC CAAAATCCCC
TTGGTTCACA TAGGTCAAAA CGCCGATGTC AGCCTGATGA GTGGCGGCCA TGTCTTGCAT
GGCAAAGTGA CCAGCATAGG TAAAGCAATC GCCAATACTA ATGTCACTAC TAATGGACAG
TTATTGCCGC AAATCGGCCA AACCTTTAAT TGGGTGAGGT TGTCGCAACG TATTCCGGTC
GATATTCAGC TAGATAGCAT TCCTAAGGAC ATAGAGCTGA GCGTCGGCAT GACAGTTTCC
ATCCAGCTAC AAACTGACAA ATAG
|
|---|
| Protein sequence | MGKIFRISLT LIVVAVAGIA GHWIWSHYLY SPWTRDGRVR AEIITIAPDV SGWVNQLNVK
DNQVVNKGDV LFTVDDTRYK ATIAELNAKA ESQKLAWELA KHKYKRRIGL TNDNLVSKET
FDEAFINTEL ARTSYELAQA QLNTAKIDLA RTQIHAPENG TLINLSLRNG NYVSKGNSVF
SLVKQDSLYI TGYFEETKIP LVHIGQNADV SLMSGGHVLH GKVTSIGKAI ANTNVTTNGQ
LLPQIGQTFN WVRLSQRIPV DIQLDSIPKD IELSVGMTVS IQLQTDK
|
|---|
| |