Gene Shew185_3953 details

Gene Information

• Locus tag: Shew185_3953
• Symbol: rho
• ID: 5369535
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 4698570
• End bp: 4699835
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640832215
• Product: transcription termination factor Rho
• Protein accession: YP_001368137
• Protein GI: 153002456
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACTTAA CTGAATTAAA AGACACGCCG ATTTCTGACC TAGTCTCGCT AGCTGAAAAT 
ATGAAGCTCG AAAATATGGC CCGCGCTCGC AAGCAGGACA TTATTTTCTC AATCCTTAAA 
GCCCACGCAA AAAGTGGAGA AGACATTTTC GGTGGTGGGG TATTAGAAAT ACTCCAAGAC 
GGTTTCGGCT TCTTACGCAG CTCAGACGGT TCTTATTTAG CTGGTCCAGA TGACATCTAT 
GTCTCACCAA GCCAAATTCG CCGCTTCAAC ATGCGAACGG GTGATACCAT TTTTGGTAAA 
ATTCGCCCAC CGAAAGAAGG CGAGCGTTAT TTTGCCCTAT TGAAAGTCAA CGAAGTTAAC 
TTCGATAAAC CTGAAAACTC CCGTAATAAA ATCCTCTTTG AAAACTTAAC CCCACTCCAC 
GCAGAAGAAC GTATGCGTAT GGAGCGCGGC AACGGCTCAA CTGAAGATAT TACCGCACGT 
ATTCTGGATT TATGCTCACC GATTGGTAAA GGTCAACGTG GTTTGATCGT TGCACCACCA 
AAAGCCGGTA AAACGCTATT ACTTCAAGGT ATTGCTCAGA GCATCAGCTA CAACAACCCA 
GAAGTGGTGT TGATGGTATT GTTGATCGAC GAACGCCCTG AAGAAGTAAC TGAGATGCAG 
CGCCTCGTTA AAGGCGAAGT TATCGCATCA ACCTTCGATG AGCCAGCCAG CCGCCACGTT 
CAAGTTGCCG AAATGGTGAT TGAAAAAGCA AAACGTTTGG TTGAGCACAA GAAAGACGTC 
GTTATCTTAC TCGATTCGAT TACCCGTTTA GCCCGTGCCT ATAACACTGT TATCCCATCA 
TCGGGCAAAG TGTTAACGGG TGGTGTGGAT GCTAACGCCC TGCACCGTCC AAAACGCTTC 
TTCGGTGCGG CACGTAACAT CGAACACGGC GGCAGCTTGA CCATTATCGC CACAGCCTTG 
GTTGATACGG GTTCTAAGAT GGACGAAGTG ATCTACGAAG AATTTAAAGG TACAGGTAAC 
CAAGAGCTAC ATTTGTCACG TAAAGCGGCA GAAAAGCGTG TGTTCCCAGC CATTGACTTC 
AACCGCAGCG GTACCCGTCG TGAAGAAAAA CTCACGACTC AAGAAGAACT GCAAAAAATG 
TGGATCCTGC GTAAGATCCT CAATCCTATG GATGAAGTCA GCGCAATGGA ATTCTTAATC 
GATAAATTGG CGATGACCAA GACTAACGAA GAGTTCTTTA CCGCCATGAA ACGCACTAAG 
TCTTAA 

 

Protein sequence

MNLTELKDTP ISDLVSLAEN MKLENMARAR KQDIIFSILK AHAKSGEDIF GGGVLEILQD 
GFGFLRSSDG SYLAGPDDIY VSPSQIRRFN MRTGDTIFGK IRPPKEGERY FALLKVNEVN 
FDKPENSRNK ILFENLTPLH AEERMRMERG NGSTEDITAR ILDLCSPIGK GQRGLIVAPP 
KAGKTLLLQG IAQSISYNNP EVVLMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD ANALHRPKRF 
FGAARNIEHG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN QELHLSRKAA EKRVFPAIDF 
NRSGTRREEK LTTQEELQKM WILRKILNPM DEVSAMEFLI DKLAMTKTNE EFFTAMKRTK 
S