Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_2987 |
Symbol | |
ID | 5371578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 3569972 |
End bp | 3571078 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640831229 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001367181 |
Protein GI | 153001500 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.331807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCGAA CTGCCCGACG TTCTTGGCGC ACTATCAGCG TCTGTGTGTT TGCTTTAGTC ACAGTATCCG CCTGTCAAAA GGAAGTCACT GAACACGCCA CTACAGCCGT ACTGCCCTCA GTCACAAGCC AAGCGTTGAG CCTGACCCCA AGCTATCAGC ACGAGCAGAC CTTCACGGGG ACTATCCGTG CGGGCAACAC GACTGGCGTC GGCTTTGAAC TAGCAGGAAA GTTAAACGAG CTACAGGCCG ATTCCGGCAT CAAAGTGAAG CAAGGTCAAA TACTGGCAAT CCTCGATACC CGACTACTTG AAGCCGAGCG TCAAGAGATC CAAGCGAGTC TGGCGCAAAC CCAAGCCGAT GTTGATCTGG CCACCAGCAC TCTAAAACGT AATCAAGAAT TGAAAAAATC TGGCTATGTC TCTGAGCAGC TATTAGATGA AAACCGCTCA CAATTAAATA GCTTAGCCGC GGCGAAAAAC CGCCTACTTG CCTCACAGCA TGCCAATCAA CTTAAGCTCG ATAAATCCAT CTTAGTGGCG CCTTTCGACG GCACCATCAG CCAAAGACTG CATAACTTGG GCGAAGTGGT TGCTGCGGGT AACCCCATTT TCACCTTAGT GGGCAATATC AATCCTGAAG CCTACATTGG CGTACCTGTC GCGTTAGCGG AGCAGTTTCA CGCCGGACAG CAAGTACAAG TCAGCGTGCA AGACCAAACC TTTACCGCCG AAATTGCCGG TATCAGCGCC GAAGTGAATC CCGTCAGTCG CACCCTACAA CTTAGGATCA GCCTGCCCCA AGATGCCCGT GTGATTAACG GTGAAATTGC GTATCTACAT CAACAGCAGC AAATTGAGCA AGCTGGGTAT TGGGTGCCAA TTTCAGCGCT AACGGATGGC ATTCGCGGAT TATGGAATCT GTATGTCATC GCAAATCATG AACAGCAATC CATCATAGAG CGCCGAGATG TAGAAATCCT CTACACCACC CAAGACATGG CCTACATTCA AGGCGCGATT CAGCCCAATG AAATCTATGT CAGCCAAGGA CTCCATAAGC TGGTCGTAGG CCAAGCCGTG TCTCCCATTG CCGCAGCCAC GAGGTAG
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Protein sequence | MDRTARRSWR TISVCVFALV TVSACQKEVT EHATTAVLPS VTSQALSLTP SYQHEQTFTG TIRAGNTTGV GFELAGKLNE LQADSGIKVK QGQILAILDT RLLEAERQEI QASLAQTQAD VDLATSTLKR NQELKKSGYV SEQLLDENRS QLNSLAAAKN RLLASQHANQ LKLDKSILVA PFDGTISQRL HNLGEVVAAG NPIFTLVGNI NPEAYIGVPV ALAEQFHAGQ QVQVSVQDQT FTAEIAGISA EVNPVSRTLQ LRISLPQDAR VINGEIAYLH QQQQIEQAGY WVPISALTDG IRGLWNLYVI ANHEQQSIIE RRDVEILYTT QDMAYIQGAI QPNEIYVSQG LHKLVVGQAV SPIAAATR
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