| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2607 |
|---|
| Symbol | |
|---|
| ID | 5371065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 3110649 |
|---|
| End bp | 3112475 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640830826 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001366805 |
|---|
| Protein GI | 153001124 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000464347 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTAC AGTTGGATAA AGCCCTTTCC TTGGTTGCCT TAGGTGTCCT TGGTGTATTA
AACAGTGCCC ATGCTGCACC TGTCTATGAA ATCGTTAATA TCGATAGTTA TGATCTGCAA
GGTACGCTTG AAGGTACTCG TAACGGCTAT GCTCTAGGCG TGAATGCCAA TGATCAGTTA
GTCGGTATCT CAAAGGGTAA GAAAAAGCTC AGTAGTTCAG ATGTCGAAGG TGGCGTCATT
GATGTTGCTG ATGGTATCGC ACCGGAAGAA ACCATTACGT ATTCGATAGA AAAAGCCATC
ATTGCCAATA ACTTTGCCTT TGTTGCCGCG CAAAATGGTG CCGCGGGAGC CTGGTTACCG
ACATTCGACA GCATTAATGG TACTACACTC CCAAGTGATA CTGCTGTGAT TAACTCTGTT
GATACCTTTT ATTACGGTAT TAACGATGCA GGTATCAAAG TGGGTAGCAT GACTGCGCCT
GAAAAGAAAA CAGAGAATAC AGCAACTACT GATGTCGCTG ATGATTATTG GTATTACCGC
GACTATGAAT ATCGCGGTGT GGCCAAGTCC GGTGACACAG AGATCCCGCT CCCCCCTCCT
TATACGCAAT ATGTTAAAGA TGATAAAACG GTTGAGTTGG GCGGATGGTC TGCTGCAACC
TCTATTAATA ACAATAACTT AGCTGCAGGT TATGCCAGCA CAGCTATCAG TAAATATGGT
AGTGATAGAG TTAATTATTG TTTAGGTACG GATAATACCT TGCCGTTGGA TATTTGTGTG
CAACGTGAGC AATACCCAAA TAGTACAGGT ACACGTAATA TTCAGTATCA AACTCGTGCC
TATGTATGGC AAATCGATAA TGATACGGCT ACAGGAACAG AGTTGCCTTT AGGATTAACG
CCTGCGACTG ACAATACCTT GACCTTTACC GCTCAAGCAC TTGGCTTGAA TAACAATGGT
GTCGTTGTTG GTCGTTCGCA TGTTTATCGT AATAACAACA CTGATAAGCT GCGTCAAGAT
GCAGCTTATT GGTCTAAAGA TACTGAAGGT AAATACCAAT ACCACTGGAT CCCTATGGGT
GATTCGATTT CAAGCTCTAT CGCCTATGAT ATTAACGACA GTGGGATTCT TGTTGGTAGC
TATCGCAGCT ATATCCAAGG TTACTTACGT GATAAATTTT TCGTCTTTGA TACCAATACC
CCGGAAGTTG CCTATGTGAC CCCGAATGAT TTTGCTTCAA CGACAACGGA TCTTTCGAGT
AAGCCAAAAG ATATTAACAA TAAAGGTCAA GTTGTTGGTT ATATTGAGAC AACATACGAT
AAAGAGAAGC CACGTCCTAA AGCGGGTTTC CTATATGAAA AATCAACCGG TGAGTTTAAC
AATCTTAATA AGTTGTTGAC CTGTGAGTCT AAGGGTTATG AAAAAGCCAG TGATGGTAGC
TGGGCACGTC ATCAAGTCGA AGTTCAAGAT GGCTCGGGTA AAATCCTTCA ATATAACGCC
GATATTTTAG TGGTTGAAGG TTCGAGTATT AATGAAGATG GCACTATTGT AGGGACGGCG
TTTATCCGTA AACCTTCTTA TCAATTTGAT AAAGATGGCA ACATAGTGAT TGGTGAAAAT
GGTTTACCTT TATTTGAGTT GAGTGGCAGT GGCGATCCAG TGACTGCCTA TATCCCGCGT
ATGGTCGTGC TTAAACCTGC TAGCAGTGGT GAGGCTTGTA CTGTTGAGGA TAATACCGAT
ACGGGTAATT TTGAGCGTTC TGGTGCTGCA ACCTTAGCTT GGTTATTTGC TTTACCATTA
GTGTGGTTCC GTCGTCGAAT TCGCTAA
|
|---|
| Protein sequence | MKLQLDKALS LVALGVLGVL NSAHAAPVYE IVNIDSYDLQ GTLEGTRNGY ALGVNANDQL
VGISKGKKKL SSSDVEGGVI DVADGIAPEE TITYSIEKAI IANNFAFVAA QNGAAGAWLP
TFDSINGTTL PSDTAVINSV DTFYYGINDA GIKVGSMTAP EKKTENTATT DVADDYWYYR
DYEYRGVAKS GDTEIPLPPP YTQYVKDDKT VELGGWSAAT SINNNNLAAG YASTAISKYG
SDRVNYCLGT DNTLPLDICV QREQYPNSTG TRNIQYQTRA YVWQIDNDTA TGTELPLGLT
PATDNTLTFT AQALGLNNNG VVVGRSHVYR NNNTDKLRQD AAYWSKDTEG KYQYHWIPMG
DSISSSIAYD INDSGILVGS YRSYIQGYLR DKFFVFDTNT PEVAYVTPND FASTTTDLSS
KPKDINNKGQ VVGYIETTYD KEKPRPKAGF LYEKSTGEFN NLNKLLTCES KGYEKASDGS
WARHQVEVQD GSGKILQYNA DILVVEGSSI NEDGTIVGTA FIRKPSYQFD KDGNIVIGEN
GLPLFELSGS GDPVTAYIPR MVVLKPASSG EACTVEDNTD TGNFERSGAA TLAWLFALPL
VWFRRRIR
|
|---|
| |