| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2465 |
|---|
| Symbol | |
|---|
| ID | 5372632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2939762 |
|---|
| End bp | 2942029 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640830678 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | YP_001366665 |
|---|
| Protein GI | 153000984 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000928581 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACA AAGACCTGGA AGTCACCTTA AATCTGGCGT TTCAGCAAGC CAGAGACGCG
CGTCACGAGT ATATGACAGT GGAACATCTG TTATTAGCTC TGATCGACAA TCCTGCGGCT
CAAGAAGCGT TAATCGCCTG TGGAGCGAAT CTAGATAAAC TCAGAGATGA AGTGGCAAGC
TTTATCCAAC AAACAACCCC AATCATTGCC GATATTGATG ATGACAAAGA AACTCAGCCG
ACGCTGGGGT TCCAACGAGT GCTGCAACGT GCAGTATTCC ATGTGCAGTC ATCGGGTCGC
AATGAAGTGA ACGGCGCTAA CGTGTTAGTC GCCATTTTCA GTGAGCAAGA ATCCCAAGCC
GTGTATTTAC TGCGCCGCTG CGATATTAGT CGCCTAGACG TTGTGAATTT TATTTCCCAT
GGTTTCGCCA AAAATGATGA TGCTGAGTCA CATCAAGATC AAGAACGGGT TGAAGATCAG
GGCGAAAGTA GCGAAGAGCG CAGCATGTTG TCGCAATTTG CGTCCAACTT AAATCAACTT
GCTAAGCAAG GGATCATCGA CCCACTGATT GGTCGTGATC AAGAAATTGA GCGCGCGATT
CAAACCCTGT GCCGTCGCCG TAAAAATAAT CCACTGTTAG TGGGTGAGGC GGGCGTAGGT
AAAACGGCGA TTGCCGAAGG GCTGGCGTAT CGCATCGTCA ATAAACAAGT GCCCGATGTG
ATGCTTGAAG CGACAGTGTA TTCCTTGGAT TTAGGTTCAC TGCTGGCGGG AACTAAGTAT
CGCGGCGACT TTGAAAAACG CTTCAAGAAC CTGTTAAAAG AACTAGCGGC TGATAAGCAT
GCCATCCTGT TCATCGATGA GATCCACACC ATTATCGGTG CGGGCGCGGC CTCTGGCGGC
GTAATGGATG CCTCTAATCT GCTGAAACCT TTACTATCTA GCGGCAACTT ACGCTGCATG
GGGTCGACAA CTTTCCAAGA ATATCAAAGT ATTTTTGAGA AAGACCGCGC ACTTGCACGT
CGTTTCCAAA AGGTGGATAT CAATGAACCT TCAGTGGAAG AAACCACTAA GATTTTGATG
GGGCTTAAGT CTAAATACGA AGAATATCAT GGGGTTCGTT ATACACAGGC TGCGATCAGC
AGCGCTGCAG TATTATCGGC CAAGCACATC AACGACAGAC ATTTACCCGA TAAAGCCATC
GATGTGATCG ATGAAGCGGG TGCACGTATG GTGATGTTGC CTATGAGCAA ACGTAAAAAG
ACTATAGGCC AAGCCGAGAT TGAGTCGATA GTGGCGAAAA TGGCGCGTAT CCCTGAGAAG
TCGGTATCCG CCACTGATAA GGACTTACTG CGTAATCTTG AGCGTAACCT TAAGATGGTA
GTCTTTGGCC AAGACAAGGC CATTGAGAGT CTGAGTTCGG CCATTCGCTT ATCGCGCAGT
GGCTTAGGCA CAGACAGGAA ACCTGTGGGT AGCTTCTTAT TCGCGGGTCC CACCGGTGTG
GGTAAAACCG AAGTCACTAA CCAACTGGCC AACTGTTTGG GGATGAAACT GGTGCGCTTT
GATATGTCTG AGTACATGGA AAGCCATACA GTGTCACGCT TGATTGGTGC GCCTCCTGGA
TATGTGGGTT ATGACCAAGG TGGCTTGCTC ACCGATGCTG TGATTAAAAA TCCGCACTGT
GTGGTGCTAT TGGATGAAAT CGAGAAGGCC CACCGCGATG TCTATAACTT GCTGTTGCAG
GTGATGGATC ACGGTACTTT GACCGACAAT AATGGTCGTA AGGCTGACTT CAGACACGTG
ACTTTGGTGA TGACAACGAA CGCGGGTGTT CAGGAGACTA TTCGTAAGTC GATTGGCTTT
ACCCAACAAG ATCACACCCA AGATGCGTTA TCTGAAATTA ATCGGGTATT TTCGCCAGAA
TTTCGAAATC GTCTCGATTC CATCATTTGG TTCAACCATT TGGATATGAC GATTATCGCC
AAAGTGGTCG ATAAATTCTT GGTGGAATTG CAGGCTCAAT TGGATGCAAA ACACGTTACT
TTGGAAGTCA GCGACGAAGC CAGAACCTTG TTGGCCGAGA AAGGCTACGA CAAGAACATG
GGCGCGCGTC CAATGGCTCG GGTCGTGACC GAATTGATCA AACGTCCATT GGCAGACGAG
ATCTTATTTG GTGTCTTAGA GTCAGGCGGT GTGGCGCATG TGGATGTGAA GGAGGGCGAG
CTTGTCATTC GTACCGAACG TCACGAAAAA GCGACAACAA AAGCTTAA
|
|---|
| Protein sequence | MLNKDLEVTL NLAFQQARDA RHEYMTVEHL LLALIDNPAA QEALIACGAN LDKLRDEVAS
FIQQTTPIIA DIDDDKETQP TLGFQRVLQR AVFHVQSSGR NEVNGANVLV AIFSEQESQA
VYLLRRCDIS RLDVVNFISH GFAKNDDAES HQDQERVEDQ GESSEERSML SQFASNLNQL
AKQGIIDPLI GRDQEIERAI QTLCRRRKNN PLLVGEAGVG KTAIAEGLAY RIVNKQVPDV
MLEATVYSLD LGSLLAGTKY RGDFEKRFKN LLKELAADKH AILFIDEIHT IIGAGAASGG
VMDASNLLKP LLSSGNLRCM GSTTFQEYQS IFEKDRALAR RFQKVDINEP SVEETTKILM
GLKSKYEEYH GVRYTQAAIS SAAVLSAKHI NDRHLPDKAI DVIDEAGARM VMLPMSKRKK
TIGQAEIESI VAKMARIPEK SVSATDKDLL RNLERNLKMV VFGQDKAIES LSSAIRLSRS
GLGTDRKPVG SFLFAGPTGV GKTEVTNQLA NCLGMKLVRF DMSEYMESHT VSRLIGAPPG
YVGYDQGGLL TDAVIKNPHC VVLLDEIEKA HRDVYNLLLQ VMDHGTLTDN NGRKADFRHV
TLVMTTNAGV QETIRKSIGF TQQDHTQDAL SEINRVFSPE FRNRLDSIIW FNHLDMTIIA
KVVDKFLVEL QAQLDAKHVT LEVSDEARTL LAEKGYDKNM GARPMARVVT ELIKRPLADE
ILFGVLESGG VAHVDVKEGE LVIRTERHEK ATTKA
|
|---|
| |