| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2371 |
|---|
| Symbol | |
|---|
| ID | 5371865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2827080 |
|---|
| End bp | 2828438 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640830585 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001366572 |
|---|
| Protein GI | 153000891 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0395364 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTACAA TCTGGACGCC AGACCTAACT GCTTTTTCAG GCCCGAAATA TCAGCGCTTA
GTCAGTGCGA TAGAACAAGG CATTTTGCAG AAAGTGTTAA CCCAAGGCAG TAAACTGCCC
CCGCAGCGCC GTTTAGCCGA TGCCTTAGGC ATCACTATTG GCACTGTAAC CCGCGCCTAT
GCATTGGCGG AACAAAGGGG TTACGTCGAA GCGCGCGTCG GTGATGGCAC CTATGTCAAC
GCCTCCCCAG TACCAGAGAT CGGTAAAGTA CAATTGAATA TGGCGACCTG CCAGCAGCCA
CTCACAGATC AAATTAGCAC CCTCAGTGAT TGCCTCAGCC AATTAGCAAA AGACCCGACA
AAGCTCAGCC AGTTACTGGG TTATCGCGCC AGTCCATTAG ATCAACATCA ACAAGTGTTT
CACCAATGGC TTAACCAACG CGGCATACAA CAAACGCCTG AGCAACTGAT CTTTACCCAC
GGCGGCCAGC AAGCGATTTT TGCTTGTTTA AGTGCATTTT TATCGACAGG CGATGTGCTG
CTGCACGAGC AATACAGTTA TCCAGGCGTG AGAATTTGCG CTAAGCAGCT CGGCGTGACC
AGCATTGGTG TGCCCCTCAC CCATGAAGGC GTGGATCTCG CCCGCTTTGA GGCGTTAGTG
CAAATCCATC ATCCCAAGTT AGTTTATCTA ACCCTGAATA ATCAAAATCC TACCTGTATT
CAATACAGTG AGTCGCAGCG ACAAAAACTC CTCGAATTGG CCGAGCAGTA TCAGTTTTAT
ATCATTGAAG ATGATGTGAA TTATTGTTTA CCCGAAGAGT GGCATTCGCC CCTGTGGCAA
TTAGCAAAAC AGCTGGCTAT CCCACGGGTA ATTTATATTT CAAGCCTGTC AAAATTGTTT
TCTGGCGGCC TAAGGCAAGG TTTTATTCTG GTGCCTGAAC CACTTATCGC CCAAGTGCGA
CTCGCGATTC ATAGCCAATG CTGGATGGTA TCGCCGCTGA ACATTGAAAT AGCCTGTCAG
TTGATTAAGA AAGGCCAAAT CACTGCCGAT CGCGACGCCA TAGTGCGCCA ACGCCAACGT
CTCTGTATCG CTATGGGCGA ACGATTGGGA TTAAACCAAA CTTGGCGAGG ACTGAACGGT
TGGCTGCAAC TGCCAGAAGA TATCAAGGCC CATCACCTCG TCACTGCGCT AGCCGCTAAA
GGCATTTTGA TCCGTAATGG AGATGACTTT AATTGCCATG ACAATTTTAT TCGCTTGAGC
CTTGGCGGCG CCGAAAACGA CAGTCAATTT CAACATGCGA TTGACTGTAT CGAGGTGACG
ATTCACTCCC TGGAACAAAA TGCCTATTCA GTGGTGTAA
|
|---|
| Protein sequence | MGTIWTPDLT AFSGPKYQRL VSAIEQGILQ KVLTQGSKLP PQRRLADALG ITIGTVTRAY
ALAEQRGYVE ARVGDGTYVN ASPVPEIGKV QLNMATCQQP LTDQISTLSD CLSQLAKDPT
KLSQLLGYRA SPLDQHQQVF HQWLNQRGIQ QTPEQLIFTH GGQQAIFACL SAFLSTGDVL
LHEQYSYPGV RICAKQLGVT SIGVPLTHEG VDLARFEALV QIHHPKLVYL TLNNQNPTCI
QYSESQRQKL LELAEQYQFY IIEDDVNYCL PEEWHSPLWQ LAKQLAIPRV IYISSLSKLF
SGGLRQGFIL VPEPLIAQVR LAIHSQCWMV SPLNIEIACQ LIKKGQITAD RDAIVRQRQR
LCIAMGERLG LNQTWRGLNG WLQLPEDIKA HHLVTALAAK GILIRNGDDF NCHDNFIRLS
LGGAENDSQF QHAIDCIEVT IHSLEQNAYS VV
|
|---|
| |