| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2053 |
|---|
| Symbol | |
|---|
| ID | 5371266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2463092 |
|---|
| End bp | 2465017 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640830257 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001366258 |
|---|
| Protein GI | 153000577 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00204351 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCAAAG CCGTGATGAA TGTGGTTATA TCCAGCGCAA TATTGCTCGC AGGCGCCTTG
AATGCCCCTT CTGCATTCGC GTTAACGCCA ACGCAAAAAA CTTTCCTTGA GGCCGAAAAA
GCCTTAAAGA AACAAGACTA TGAAGTCTAT AAACCCCTAC GAGCAAAATT AGGTAATTAT
CCGCTCGCGA TTTATTTAGA CCATGATATC GACATAGGCG ATCTCAATGG TTTGCATGGC
GCTGCGGCAA AAAATCTGAT TGATAAGTAT CAAACAACGC CTATGTACAA CAGGTTAAGG
TCTAAATACT TAAACAATGC AGGAACCCAA AAACGTTGGA ATGATTATCT TGCGATAAGT
CCCGATGCTC CTACCGACAT CCGCCTGCAA TGTTATTACT ACGAGGCAAA ACTCGCCAAG
GGCGATGTAA AGACGGCTTA CGCGGCGGCG CAATCACTGT GGGTCTTTGG TAGTTCGCGG
CCAAAGGAAT GTGATCCCCT GTTTAATGCT TGGACCAAAG CAGGTAAACG CACTCAAGAT
GTGATCTGGG CGCGGATGAT GCTGAGTTTT GAAACTGGCG AAACCAGTCT GCTGAGCTTT
TTATCCCAGA AAATCACCAC CCATAACAAC GAAGCAAAGC GTTTAGTCGC TGTCTATAAA
GATCCAAACA GCCTACGCCA TACCGAAAAG TTTAAGGATA AAAATCCGAT TGTGGGTGAC
ATAGTCGCAG CGGGATTAAA ACGTCTTGCC CGCAAGGATC TCGACCAAGC GATTAATTTG
TATGAACGGT ATCAAAAGGC TAATCGTTTC ACGCCAGCAC AAGCCCAACA ACTGGATAAA
TACTTAGTTC GCCGTATCTT AATCGAACAA GATGATAGCC ATAAAAGCTA TGTCGACAAT
GTGCTGGCCG AGCTGAAAAG TGACGACTTA TTTGAACGCC GGTTAAGATG GGCCATTCGC
GATCACGACA TGCGCAGCAT TGCCCGTTAT TTAAATTTAC TGCAACCAGA AACCTTGGCT
AAGGAGCGCT GGCAATATTG GCTCTATCGC ACTAATGCTA AAGATGCGCC AGAAAGTGCC
ACCAAAGCGC TGGCGACAAT CAGCAATGAA CGTAATTTTT ACGGTTTTGC CGCCGCACAG
TTTTTAAATA AACCCGTCTC GCTGAATCAA AGCCCTGAGC CTGTCGTCGA CGCCAGCAGC
CAAAAATTAA CCGATGATGT GGGTTTTGTG CGCGTGCAAG AGCTAATGGC GCTGGATCGT
TATTTCGATG CACGTTACGA ATGGATGTCG CTGCTCAGAC GCAGTGACAA TACTATGCGA
GCCCGTTACG GCCGTTATGC CCATGAACAA GGCTGGTATG ATTTTGGCGT AGAAGCCAGT
ATCCAAGGTA AGTTGTGGGA TGACATTCCC CTACGCTTCC CGATGGCGCA CCAAGAAGGT
TTTGAGCACG CCAGCAAAAA GCACAAAGTG AACATAGATG AAATCCGAGC GATCAGTCGC
CGCGAGAGCG CGTTTTATCT TTATGCGACC TCAGGCGTGG GTGCCCGCGG CTTAATGCAA
ATTATGCCTG CGACCGCTAA AGCAACCGCC AAGAAACATG GGGCTAAATA TAGCGATCCT
AAGGATCTTT ACAGCGCGGA GCTTAACCTC AATCTTGGCA GTGCTTACTA TGCCCAGTTG
TTGAAAGAGT TTAACCAGAA CCGTATCCTC GCCACAGCCG CCTATAACGC CGGTCCGTCA
CGGGTGCGTC GCTGGTTGGC AAACTCAGAT GGTAAACTCG ATGCCATGGG CTTTATCGAA
GCCATTCCCT TCACTGAGAC CCGTGAATAT GTGCAAGCCG TCTTCAGCTA TCGATTAATT
TATGAGGCGC AGGAGCAAAA AGCGCAGCCA TTATTCAGCG AAGCCGAACT GAAGTTTGCT
TACTAA
|
|---|
| Protein sequence | MCKAVMNVVI SSAILLAGAL NAPSAFALTP TQKTFLEAEK ALKKQDYEVY KPLRAKLGNY
PLAIYLDHDI DIGDLNGLHG AAAKNLIDKY QTTPMYNRLR SKYLNNAGTQ KRWNDYLAIS
PDAPTDIRLQ CYYYEAKLAK GDVKTAYAAA QSLWVFGSSR PKECDPLFNA WTKAGKRTQD
VIWARMMLSF ETGETSLLSF LSQKITTHNN EAKRLVAVYK DPNSLRHTEK FKDKNPIVGD
IVAAGLKRLA RKDLDQAINL YERYQKANRF TPAQAQQLDK YLVRRILIEQ DDSHKSYVDN
VLAELKSDDL FERRLRWAIR DHDMRSIARY LNLLQPETLA KERWQYWLYR TNAKDAPESA
TKALATISNE RNFYGFAAAQ FLNKPVSLNQ SPEPVVDASS QKLTDDVGFV RVQELMALDR
YFDARYEWMS LLRRSDNTMR ARYGRYAHEQ GWYDFGVEAS IQGKLWDDIP LRFPMAHQEG
FEHASKKHKV NIDEIRAISR RESAFYLYAT SGVGARGLMQ IMPATAKATA KKHGAKYSDP
KDLYSAELNL NLGSAYYAQL LKEFNQNRIL ATAAYNAGPS RVRRWLANSD GKLDAMGFIE
AIPFTETREY VQAVFSYRLI YEAQEQKAQP LFSEAELKFA Y
|
|---|
| |