Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0590 |
Symbol | |
ID | 5371581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 702634 |
End bp | 705480 |
Gene Length | 2847 bp |
Protein Length | 948 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640828789 |
Product | P pilus assembly protein porin PapC-like protein |
Protein accession | YP_001364815 |
Protein GI | 152999134 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTTA TTATACACCT ATTAACGTTA TTTTTTGTTT TTTTTTCATC ACACTCTTCG GCAAAAAATG AAGAGCAATC TTCATATCCG ATTGAGTTCT CTGATTTCTA TATAAAACAA ACAGGAAAAG TTAGACTTGT TGTTGCTGGT GAAATTAAAG ATATTGAAGT AGTTGGTACT TTTAATTATG ATGGTATTAA TGTTTCCGCC GATGATGTAA ACCAAAAAAC GATAAGAAAT TATTTGGTAA ACTATATCAA TGATAAAGAA GTTGATATAG TCATCAGAGA ACTCATTGAT GGCATTAATG CTAACCCAGG CTGTGAAAAT ATCATTAGTG ATTGCGTACC GAATGTTTTG CCTAATGAAG TAAGTTATTC TTTTGATTTT GATAACAATA CATTAAAGAT ATTTGCTGGC ACATCATTGA TTACTAAGCA GAATAATAAA GAGTATTTGC CGTCTTTAAG GAGTGGTAAT GGGCTTGTCA ATAACTCAAC CTTGTATACT CAGTTTAGTA ATGAAGCGTC CACTAGTTTC AATTTTTCAA ATAAAACCAC TATCGGTTTG CCGGTTGGGT TTGTAGAGTT AGACACCCAA GCTAGAAATG CAGGTGATAA TTTTGATGTG TATAGTGCTG TTTTTGATAC AGAATTTGGT GACAAGAGGA TAGTGTTCGG CTACCTCAAC AATACAGGAA GAAGCTTTAA TACAACGGAT ATTTTGAATA ATAACGCTGA TTACTCAGCT TTTAATTTAC AATTTGGGTC TAGCCAAAAT CTACTTAAAG GTGGCGCAAA AGGTTCTCAA CAATTGTCAT TTATAGCTCC GCAAGATGGA CAGATAGAAC TCTATCTAGG TAATAGGTTA TTGCTATCGA AGTCTGTATC ATCAGGTAGA CAAAGCATAT CTTACTCAGA GTTACCTCAA GGCGCGTACA CCGTAAATTT AAAACTCATA TCAGCAGGAA CAGTACTTAT TGACGATATG ATTCAAGTGG TCAATAATAA TAATTTTATA TTAGCTTCTG GTGATGTTGA TTACGCATTC AATGCCGGTG TGTTTGACAC CAAAAAATTT AGACATACGA CGCATGATTA TTTTAACGAT GTGCATACAA CAGAAAATGA TTTTAAAAGA GGTTATCTTC AGGCTAAATC TTCATGGAGA TTAGCTGAGC CTGTTATATT ATATAGTGGA ATAACAACAA ATGTTGATGA GCATTATTCT CAAATCGGTG CAAGGTACAT ATATGAAGAT TTATTTTCAG CAGATTACTT CTTAGGGTAT TTTTCTACTG GTGACATATA TCAATCAGCT AACATTAAAT TTGGCCGATT ATCGTTATCA GCTAAGGCGT TTGATTTAGA TTACAACACT AGGAATTTTA CACTTTCAAA TCAATTATAT GGTACGAATC CATATAAAAA CTTTTCTATA AGTTATTCTA AACCTTTCTT TGGTGGCAAT GGTTATTTAA ATTACAATAA TTACAGTAGT AAAAATTATT ATGGAATAAA CAACGATAAT AGTATTGTTA TCGAGAAGCC AATTGATTAT ATCTATAATA TTAATGCTTT AAATAATGTT TTAAATAATG CTTTAAACAA TGGCTCATAT AGTACAATAA GTAATGAGAA CTATAATATA GGTTGGTCTA CTAATATTTA TAGCGGCACA TTAACGCTCA ACAGTAACTA CAATTCTAAT AGTGCTTACG ATGAGGTTAA ATTCGGCATT TATTGGAGTC AACGTTTTGG TAAAAGTGTA GCCGGAGGTT TGTCTGTAAT GACTAACAAT AAAGGTTCTT CCCAATATAA TAATTCATTG AGTTTAAATG CAAGTAATGA TAATTGGTAC GCCAATCATA CAGTGATGGC CAGTTTACTT AATGACGATA ATGATGATAA TTTTGAGAGT TCTCTTTCCG GGACTTATTA TTGGCAGAAC GACAAGGCTA CTGTTAATGC TTACAATTAT GTAAACAGTA AAGGGTTACT TATTTCTTCA GGCACTTTGC AAAGCACTCA AGTAGTGTCA GCAGATTCGA TATCTTTAAC AAAGAGTAAT GGTAATGCAT TTGCAAGCAT AAACTTAGAA TCTGACATTC CAATATCGAA AATACGTTAC AATTTATATT CTGATAAGTA CTCCAAAAGT GGCTATATTT CGGGTTCCGA AAATACGATA TTAGATATAA ATCCTTATGA TCAGGTTTTG TTTTCGCTGG ATGATGTAAA TAATGTTGAA ATATTATCCC CAACTGAAAG CAAATTTGTT TATCCAGGTA CGGTTATTAG TATAGACAAC GTGATTAAAA GCCTTGATAG TCAGGTTTTT ATTGTCAGCG ATATTCTTGG TAAGCCAGTA AGTCAAATTC GATGTTCAGG GAATGGCTGT CGCGGTGTTG AACCTCTATC TAATGATGGC GTGTTTAGAG TTAAATTTCA AAAAGGGAGT ACTTTCACAT TAACATCTGA AAGACGTCAA TGTGTTTTTG ATAAAGATGA ACCCAAAAAA TATATTAATG CTGTTTGTTT GCAGGGCTTA TATCATGCTG ATGACAATGA AATTACTCAA GCAGATGAAA CAGAAGGCAC TTTAGGTGAC ATTGAGGGCT TTGCTTATAT CGGTTACACG TTAAATATGA ATACTGTAGA TGCTCTCGAA AAAGTTGGTT TACCTTTTAA AAGTATATTT GTAGGTAAAA CACAATATAT TTATGTAAGG CATTCTAACT CATACAGCTC TGTTCAACTA GATGTTTTAG AGTCTATTGG TGCAAAGTTG ATACCAAACA ATATCGATAT TCAAACCTTA TTTACAGGGT ATTTCTATCA TGAATAA
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Protein sequence | MNFIIHLLTL FFVFFSSHSS AKNEEQSSYP IEFSDFYIKQ TGKVRLVVAG EIKDIEVVGT FNYDGINVSA DDVNQKTIRN YLVNYINDKE VDIVIRELID GINANPGCEN IISDCVPNVL PNEVSYSFDF DNNTLKIFAG TSLITKQNNK EYLPSLRSGN GLVNNSTLYT QFSNEASTSF NFSNKTTIGL PVGFVELDTQ ARNAGDNFDV YSAVFDTEFG DKRIVFGYLN NTGRSFNTTD ILNNNADYSA FNLQFGSSQN LLKGGAKGSQ QLSFIAPQDG QIELYLGNRL LLSKSVSSGR QSISYSELPQ GAYTVNLKLI SAGTVLIDDM IQVVNNNNFI LASGDVDYAF NAGVFDTKKF RHTTHDYFND VHTTENDFKR GYLQAKSSWR LAEPVILYSG ITTNVDEHYS QIGARYIYED LFSADYFLGY FSTGDIYQSA NIKFGRLSLS AKAFDLDYNT RNFTLSNQLY GTNPYKNFSI SYSKPFFGGN GYLNYNNYSS KNYYGINNDN SIVIEKPIDY IYNINALNNV LNNALNNGSY STISNENYNI GWSTNIYSGT LTLNSNYNSN SAYDEVKFGI YWSQRFGKSV AGGLSVMTNN KGSSQYNNSL SLNASNDNWY ANHTVMASLL NDDNDDNFES SLSGTYYWQN DKATVNAYNY VNSKGLLISS GTLQSTQVVS ADSISLTKSN GNAFASINLE SDIPISKIRY NLYSDKYSKS GYISGSENTI LDINPYDQVL FSLDDVNNVE ILSPTESKFV YPGTVISIDN VIKSLDSQVF IVSDILGKPV SQIRCSGNGC RGVEPLSNDG VFRVKFQKGS TFTLTSERRQ CVFDKDEPKK YINAVCLQGL YHADDNEITQ ADETEGTLGD IEGFAYIGYT LNMNTVDALE KVGLPFKSIF VGKTQYIYVR HSNSYSSVQL DVLESIGAKL IPNNIDIQTL FTGYFYHE
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