| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_23530 |
|---|
| Symbol | |
|---|
| ID | 8396242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 2603890 |
|---|
| End bp | 2606571 |
|---|
| Gene Length | 2682 bp |
|---|
| Protein Length | 893 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644987100 |
|---|
| Product | ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| Protein accession | YP_003144711 |
|---|
| Protein GI | 257065039 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000875217 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTC CTGTCGGATA TTTCGGATGC AAGGGCCTGA CGAAACGGTT TCGTTCGGGC
TCTTGCCCTG TTGTGGCCCT TGATGACGTC ACCTTGGCCT TCGCGCTGGG GACGCTGACG
GCCGTCACAG GTCCGTCCGG GTGCGGCAAG ACCACGTTGC TTTCGGTGCT GGTCGGCCTC
GATAGGAGTT TCGAAGGCGC CGTGGTCGTT AACGGTACGG AAGTGACCTG CGACGACGCT
TTCGACTGGG ATGCCTACCG ACGTCGTGTC TCGGGTATGG TGTTCCAAGA CTTCAATCTG
ATAGACCATT TGACAGCCGT CGAAAACGTC GAGGCGGCGC TGCGGCTTGC TGGATTCGGG
CAGACCGACG AGGCGCTGCA TCGGCAGGCG TTGTCGGCGC TTGATCGGGC GGGCGTGGCC
GACGTGGCGG ACCGCCTTCC CTATGAGCTT TCGGGCGGAC AGCAGCAGCG GGTGGCCGTC
GCGCGGACCC TTGCACGAAA CCCGCAGGTT ATTTTGGCGG ATGAGCCCAC GGGGTCGTTG
GATGCGGACA GCGCCGACGC CATCATGGGC TTGCTGCGCG AAGCCGCCGA CCGCGGCAGC
GTCGTGGTGG TGGTCACCCA TGACGAACAC ATTGCCGAAA CCTACGCCGA CACGGTGGTG
CGGTTGGACG AAGGCCGGGT CGTTGCCTGC GAACATCGGA AGGACGTGCA GACGCGAACC
GCCGAACCGT CGAACGTCGC GGGCGGCCTG TCGTTTCCGT CTTCAATCTG GCTTGCAAAA
CGCAGGATGG TTGCCTGCAA GCGGCGGATC GTGCGCACCG CCTTGGCCTG CATGATCGGC
TTTTTGGGCC TCGGGTTGTT CGGCAATCTG CTGTTGGGAA GTGTCGATTA CCTTCGCGAC
TTGGAACAAG GCATCATCAT GGCGTACCCG CTGACGGTTT CGGACTCCGC GTTCGCCGCA
GCCGAAAACG CCGCGCTGGA CAGCGTGTCC GATGCCGATG CGGCCGACGC CGAAAGCATC
GGGGTCGACG GGATGCTCGA ATCCGCGGTG GATGCGGCCA ACGGCGTATC CGGTGTGCCG
GGCATGTCGC GGTTCCTCTC GTACTTCCAG GTCTCATCTG CCAACGCCGA CGTGGACCTG
ATGGGTGTCG TGCGGGACTA CGGCGTGACG CCCCTGATTT ACCGAAGGGA CGTCACGGGC
GCGTTCATCC AAGTCAATCC TTCGTCTCTG GCAACGCGCC TGGGTGCGGC CGACGGATCC
GACGAAGCGG CCGCCGACCT GTTCGGCACG GCGGACATGT GGAGCCCCCT CATTTGGAAC
GGAGGGGACA GAGCCGAGCC GTATGAGGTG CTGGCCGGGC GCATGCCTGC CGCATATGAC
GAAATCGTCC TTGTGACCAG CGCGAACGGC ACAGTAAGCG ACTATGTTCT TTATGCGGCG
GGCTTGGAGG ACGCCGCTCT TCTGACCGAC GGCGAGGTTT TTACGGGTAT CGACCGGATG
GCTTACGACG ATGTGCTGGG CGTAACCTTC TGCGCGTTTG CGGGAAGCGA CGCGTACGAC
TTCGACGGGA ACGTATGGCA GGACCGTTCC GCCGACGCGG CATACATGGA GTCGAAGCAG
AATGACGCGA CGGTCCTTAC GGTGGTGGGC GTGGTGCGTC CCGCCTCCGA ATCGGACAGC
GTATACGTCG CCGGCGGCTT CGGGTACCTT CAAGAGCTGG AGGTCCAGCT CATCGACCGG
GCATGGGATT CGGACATCGC GCACGATCAG CAGGCCCGCT ACGACACGGA CGTGTTCACA
GGCGAAGCCT TCGGCGGGCA GACCGTCGAA GGCGCCGCGG CGGCCATGAT GGAAGGCGTG
CGGATCGACC GGTTGAGCGA GGCCCAGCTC GCCTGTGTGG AAAGCCTGAC AGATGCGCAG
GTCAGCGCCT TGCGGGAGGA GTACCCCGAC CAGTTCGACG ACCAGGGAGC TCTGGATTTG
ACGGATGCCC AATGGGATCG CCTGGCGGAC GTGTCCGACA GCGACTTCGA GCAGGGCATC
GCCGAGGCCC TGGACGCCGC GGCGTCGTCG GGCTATCGCG CGAACATGGC GGCAATCGGA
GCCGTGGACC GGTCGAGCCC CGACTCGGTG GCGTATTATC CCGACGGCCT TCGCCCCATG
GAGCAGTCCA TCGAGATTAT CGACCGGTAC AACAGCCAGT TCTGCGAAGA CACCTGGGTG
CCCATGTCCT ACGCCGACAC GGCGCTCACG CTCATCCGTC GCCGGCTGCT CAGGCTGGCG
GCGCTGTTCG CCTGCGTGGG CGCGGTTGCC GTGCTCGTCA TCTCGTCCAT GGTGTCGTCA
TCCACCCGCG ATGCCGCCAT CGAGCGCACC CACGAACTGG CGGTTCTGCG GTCCTTGGGT
GCCTCGCCGC GCCATGTGGA AGGATTGCTG GTCATCGAGT CGGCCGCCAT CGGATTGGTG
AGCGCCGTGG TCGGCGTTCT GGTGGCAAAC CTGCTCGTTG CGCCAATGAA CGGCCTCTTT
GCCACGGTCA TTTCCATTTC GAACCTCATG CGGTGGTCGC TTCCCGGATC GGTGCTGATG
GTGCTGGTCG GCATGGCCCT CACGGTGCTC GTCGCCTGGC GGACCGCCCG CCGCTTCCGG
TCCATCGACC TGGTCTCGGC CCTGAAGGGC GCCCGCCGAT AG
|
|---|
| Protein sequence | MTAPVGYFGC KGLTKRFRSG SCPVVALDDV TLAFALGTLT AVTGPSGCGK TTLLSVLVGL
DRSFEGAVVV NGTEVTCDDA FDWDAYRRRV SGMVFQDFNL IDHLTAVENV EAALRLAGFG
QTDEALHRQA LSALDRAGVA DVADRLPYEL SGGQQQRVAV ARTLARNPQV ILADEPTGSL
DADSADAIMG LLREAADRGS VVVVVTHDEH IAETYADTVV RLDEGRVVAC EHRKDVQTRT
AEPSNVAGGL SFPSSIWLAK RRMVACKRRI VRTALACMIG FLGLGLFGNL LLGSVDYLRD
LEQGIIMAYP LTVSDSAFAA AENAALDSVS DADAADAESI GVDGMLESAV DAANGVSGVP
GMSRFLSYFQ VSSANADVDL MGVVRDYGVT PLIYRRDVTG AFIQVNPSSL ATRLGAADGS
DEAAADLFGT ADMWSPLIWN GGDRAEPYEV LAGRMPAAYD EIVLVTSANG TVSDYVLYAA
GLEDAALLTD GEVFTGIDRM AYDDVLGVTF CAFAGSDAYD FDGNVWQDRS ADAAYMESKQ
NDATVLTVVG VVRPASESDS VYVAGGFGYL QELEVQLIDR AWDSDIAHDQ QARYDTDVFT
GEAFGGQTVE GAAAAMMEGV RIDRLSEAQL ACVESLTDAQ VSALREEYPD QFDDQGALDL
TDAQWDRLAD VSDSDFEQGI AEALDAAASS GYRANMAAIG AVDRSSPDSV AYYPDGLRPM
EQSIEIIDRY NSQFCEDTWV PMSYADTALT LIRRRLLRLA ALFACVGAVA VLVISSMVSS
STRDAAIERT HELAVLRSLG ASPRHVEGLL VIESAAIGLV SAVVGVLVAN LLVAPMNGLF
ATVISISNLM RWSLPGSVLM VLVGMALTVL VAWRTARRFR SIDLVSALKG ARR
|
|---|
| |