Gene Shel_19830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_19830 
Symbol 
ID8395872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp2212900 
End bp2213757 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content59% 
IMG OID644986734 
Producttwin arginine targeting protein translocase subunit TatC 
Protein accessionYP_003144346 
Protein GI257064674 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0805] Sec-independent protein secretion pathway component TatC 
TIGRFAM ID[TIGR00945] Twin arginine targeting (Tat) protein translocase TatC 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATCG GTCCGGCGCG AATGCCGCTC TTCGAGCACC TGGGCGAGCT GCGCATGCGT 
TTGGTGCGCA TCGTGGTGGT TCTCTTCGTC GCCATGTGCG TGTTCTATCT TGCTACGCCA
ACCATCATCC ATTTGCTGTT CGAGCCCATT TCGGAATACC TTCCCCATGA CGCAGACGGC
ACGTACACGC TGAACGTCCT GGACGTCTTC GGCTCCTTCA CCATCCGTTT CAAGGTGGCG
CTGTGGGCCT CCGTCGTCGC TACCATGCCC ATCATCCTCT GGCAGATCCT GGCATTCTTC
CTGCCGGCCC TCAAGCCCAA CGAGCGTAAG TGGTTCATCC CCACATTCGC CGTGGCCGTG
GTCCTGTTCA TCGCCGGCAC GCTGTTCTGC TACTTCCTGA TTCTGAACCC GGCCGTCGCA
TGGCTGACCG ACCAGGCCAG CGGATATGCG TCCATCTTCC CGGACGCCAA GGCTTGGGTG
GACGTCATCA TCAACTTCGA AATCGCCTTC GGTTTCGCGT TCGAGCTGCC GTTGATTGTG
TTCTACCTGG TGGTCTTCGA GATTATTCCT TACGCCAAGC TCCGTGAGCA GTGGCGCACG
GTCTATATCG TGCTCATGGT CATCTCGGCC ATGGTCACAC TGGACGCTTC CCCCGTCACC
ATGCTGCTTA TGTTCGCGGC GCTGCTGATG CTCTACGAGG TCAGCCTGCT CATCGCCCGC
TTGGTTTTGG GCAACCGCGT CCAGAAGCAG AAGGAAGAGG CCGCCGCCGA AGCCGCCGAA
GAGGCCGAAT GGGCTTCGGA GTGGGAGAAG ACCCGCGCCA GGATCAAAGA GCGTTTAGGC
GACGACGAAG AAGAATAA
 
Protein sequence
MPIGPARMPL FEHLGELRMR LVRIVVVLFV AMCVFYLATP TIIHLLFEPI SEYLPHDADG 
TYTLNVLDVF GSFTIRFKVA LWASVVATMP IILWQILAFF LPALKPNERK WFIPTFAVAV
VLFIAGTLFC YFLILNPAVA WLTDQASGYA SIFPDAKAWV DVIINFEIAF GFAFELPLIV
FYLVVFEIIP YAKLREQWRT VYIVLMVISA MVTLDASPVT MLLMFAALLM LYEVSLLIAR
LVLGNRVQKQ KEEAAAEAAE EAEWASEWEK TRARIKERLG DDEEE