Gene Shel_09280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_09280 
Symbol 
ID8394819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1069675 
End bp1070871 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content58% 
IMG OID644985687 
Productacyl-CoA dehydrogenase 
Protein accessionYP_003143318 
Protein GI257063646 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCGA ACGCGACTAT CACCGACGAG CAGTTTGAGG CTTACCTCAA GCAGATCCGC 
GAACTGGTGG AAGGTCCTTT TGAGGAGATT CAGAAGGAGG TCGAAGTCAC CAACGTGTTC
CCGCAGGAGT TCTATGATCT CGCCATCAAG AACGATCTGT ACCGCTTCTA CCTGCCCGCA
GAGTACGGTG GATGGAACCT CAACGAGCTC GAGATCCTGC GCGTCCAGGA AGAGTTCTCC
CGTGGCCCTG GCGGAATGCG CATGCATCTC CATCATGCCG CTGACATGAA CTGGCGCATC
CTTGACGACT ACGGCAAACC GGAGCTCAAG GCCAAGTACA TGGACAAGTT CCAGGACAAG
ACCATCTACT GCAACTTCGC CATCACCGAG CAGACTGGCG GCACCGGTGC TGACCTTCAC
ACCACCGCTC TGAAGAACGA GAAGGGCAAC TACGTCCTCA ACGGCGAGAA GTGGCTCATC
TCCCACACCG ACTGCTCTGA CTTCACCTAC GTCATCGCTG TGACCGACCC CGAAAGCGAC
AAGGATTCCC GCCTGTCCGC ATTCTTCGTT CCCAACGATG CTCCTGGCTT CGAAATCGTC
GAAATGCCCC ACATGATGGG CTGCCGCGGC GCCGGCCATG CAGGCCTGAA GTTCAACAAC
GTTGAACTCG AGCCCATCTA CCTGCTCGGC GAAGAGGGCC AGGGCATGGA AGTCGCCATC
CACTCCCTCT CCGTCTCCCG CGTCCACATC GCCATGTCCA ACCTCGGTAT GGCTCAGCGT
ATGCTCGAGA TCACCCTCAA GCGCGCCAAT GACCGCATCA CCTTCGGCAA GCCGATCGCT
TCTCGCCAGA TGATCAAAGA GAAGATCGCC CGCATGCAGG CTCACATCCA CACCCTGCGT
TGCGCCATCT ACGACTTCGC TCGCGACTAC GACATCGATC CGTACAACGA GTACGTCACC
GAGAAGGCCG CCATCTGCAA GCTGGTCTCC ATCGAGACCG TCAAGGAAGT CTCCGACGAG
ATGCTGGAGA TCTTCGGTGG CGACGGCTAC TTCGAGGACA GCCCCTACGG CCCGACCGAG
CGTCTGTATC GTGACTGCCG CGCCATGTGG CTCGAGGAAG GTGCTCCCAA CGTTCAGAAG
ATCACCATCG CTCGCGAGTG CCAGAAGTTC GGCGGCGTCG TCAAGTACAA CTTCTAA
 
Protein sequence
MNPNATITDE QFEAYLKQIR ELVEGPFEEI QKEVEVTNVF PQEFYDLAIK NDLYRFYLPA 
EYGGWNLNEL EILRVQEEFS RGPGGMRMHL HHAADMNWRI LDDYGKPELK AKYMDKFQDK
TIYCNFAITE QTGGTGADLH TTALKNEKGN YVLNGEKWLI SHTDCSDFTY VIAVTDPESD
KDSRLSAFFV PNDAPGFEIV EMPHMMGCRG AGHAGLKFNN VELEPIYLLG EEGQGMEVAI
HSLSVSRVHI AMSNLGMAQR MLEITLKRAN DRITFGKPIA SRQMIKEKIA RMQAHIHTLR
CAIYDFARDY DIDPYNEYVT EKAAICKLVS IETVKEVSDE MLEIFGGDGY FEDSPYGPTE
RLYRDCRAMW LEEGAPNVQK ITIARECQKF GGVVKYNF