Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_08580 |
Symbol | |
ID | 8394749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1002004 |
End bp | 1002780 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644985618 |
Product | ankyrin repeat-containing protein |
Protein accession | YP_003143258 |
Protein GI | 257063586 |
COG category | [R] General function prediction only |
COG ID | [COG0666] FOG: Ankyrin repeat |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.625021 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000415103 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATTGTCA ACAGCGATAT TGTGAGGCTT GGGTTTGCCG ATTTCGATCG GCGGCAATTC ATTATTGATG ACATAAATAG AACCAGCGAA GATCTGAAAG CTTCAGCATA CATGAAAGGA GAGCTCGACT ATGATGAGTG GAATCCTTTT ATGGCGGAAG ACCCGTCTTA CCGATATGCG CCGATAACGG AGTTCGACAG ACGGGTCATC AAGAACTACT ACCTGCTCTT CAGTGCGCTG AACTTTGATT CCCTGCATGC TGAGAAGGCG TTGAGCTTAG GGGCCGACCC CAATGTGCAG TGCCTTGTTG GAGGAAGGCG CTACTATCCA CTCATAGCAG CTGCCACTTC CGGCGATTCT GAAACGGTCA AGGTTCTTGT GGAGAACGGT GCCGACGTGA ATATCCAACA GTTAAACGGC GAATGCGCTG TGGCCTTGGC ATCTTCGTTC GATCATTACG ACATGGCGAG GTACCTTCTG GAGCATGGCG CTAACCCCAA TTTGGAAGCT CGAGGAGGAA TAACCGCTCT TGCGGTTGCC GAAAACTCCA ACATGGTAAA GCTGCTTTTG GCTTATGGCG CCGACCCCAA CATTCCTGAT TCGGATGGCG ATTTGCCCAT AGTCGCAAGA ATCGACAATG ACGATTTCTT ATCGGCGGGT GTTCTGGTGC AAGCAGGAAC AGATTTAGAT TGGAAAAACC ACATGGGAGA GAGCGCTCGT GAGCGAGCCA TCCGCGTTGG TAGTGATCTC ATGCGTCGTG TAATGGGTTG TGATTAG
|
Protein sequence | MIVNSDIVRL GFADFDRRQF IIDDINRTSE DLKASAYMKG ELDYDEWNPF MAEDPSYRYA PITEFDRRVI KNYYLLFSAL NFDSLHAEKA LSLGADPNVQ CLVGGRRYYP LIAAATSGDS ETVKVLVENG ADVNIQQLNG ECAVALASSF DHYDMARYLL EHGANPNLEA RGGITALAVA ENSNMVKLLL AYGADPNIPD SDGDLPIVAR IDNDDFLSAG VLVQAGTDLD WKNHMGESAR ERAIRVGSDL MRRVMGCD
|
| |