Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_06580 |
Symbol | |
ID | 8394550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 769031 |
End bp | 770920 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644985420 |
Product | predicted xylanase/chitin deacetylase |
Protein accession | YP_003143066 |
Protein GI | 257063394 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATCCT ACGAATACCG CGGCAGGGAG TATCGCCGCC AAAAGCCCAC AAGGCGCAAG CCCAAGGCAA AAACCGAGAA CGTCGGCAAT ATGGGAGCTT GGCCCGCATT CGCCGACGAC ACCGATCCGA AAGCAGGCGG CGGTGCCTGG CCGCAAGCCA GCGACTACGC AGCCGACCTG GACGAATGGA CGGCACAACG CGCAGATGAC GTTGAGGCCT CTTCCCGTCG GGCCGTTCCT CGGCATGCCC CTGAGCAAGC CGCCACCACT GCACCGAAAT CGACGCCTAT CGGTCGCCAT GCGCGCATCG CCTCCGATAC CGAGAACACC GCTGGGAATG CATCTGTCGC ACGGGCACGG CACGCGGCGC ATGCAGCAGC AACCGGCCCT GTGGCCGTCT CTGCTCGATC AGCCGCCACC ATCGGCCCCA CGGCACCTCG GTTCGCAGCC GCCAACACAC CTGCGGAACA GCCCGTAGAA ACCCGAGTTC CGACACCCGC CATTGTGGAT ACGCATGCCA CAGCCGTCAT GACACCGTTG GATGCCGCAA CCGCCAACAC CGAATCACCC TCCCCGGTCG TCGAAAACGA GCCGCTTGCT TCCGAAGCTG GCAATCAAAA CGCCCGGCCT CAGAGGCCCT CGACCCGCAA CCACGGACTT GTCGCTGACG ACGCCGGCGA TTCCGACCTG GTCGCCGCGG CCCCGGTTCC TTTCCAGCGC ACACCCAAAC GCCGTTCCCG CAAAGGCCTT GTCGCTGCCG TGCTGGCCAT TGCCCTGATA GCCATGGGGG CAGGCGGTTT CTTCATGCTG AATCGCGGAT CGGATGCAGA AACGAATGCG ACACCCACGC CCGCAGTCAG CCAAAACCAG TCTGAAAACG CAAGCGCCTC CGACACCCAA TCCACCGAAC CCGAAACGAC CGACGAAGGC TCCGGAACGT CTGCCGCAGC GCCCGCCGAT CCCGGCGACA TCGTCATCGG GGTGAACGGC GACCCGGATA CCTACGTCCT GGTCGGCGAA GAATACATTG AAGGCGGCGC CCATGCGGCG GAACCCATCG ACGGCATTCT CAACAACGCC ATCGAAACCA ACGGGGACGT CGACACATCC ACGCCGGGCG ACTACGAAGT CACCTACACC GTCAGCGACT CGACGGGCCA CACGGCAACG GCAACGCGCA CGGTCCACGT GGTCGACAGC ATGGAGACCC AGGAGTATGG CATCCCGGTT CTCATGTACC ACTACGTCTA TACCGAAGAC GATCTGCCCG ACGAGGTGAA CGTCAACTAC ATCCTCGACA CCGATCTGGC AAACCAGCTG AATTACCTGC AGGAAAACGA TTTCTACTAT CCGTCGTACC CTGAAGTCCG AGCTTTCCTG GAGGGCGCGC ATTCGCTGCC CGCCAAGAGC GTCGTGCTCA CGTTCGACGA CGGCCAGTCA GGGTTTTTGG CGTACGGCAT CCCGCTTCTT GAAGAATACG GCGTGCCGGC CACGTCCTTC GTCATCTGCA GCAACGACAA CGCCGAGTCC ATCCCTATCG ACCATGCGAG CCCTGTGATC TCATACCAGT CGCACTCCTA CGCGCTGCAT CAGGGCGGCG GCAGCGTCGG GCACGGCGGC ATCATCAGTG CGCTGTCCCA CGAAGACATC GTCGCCGATC TGAACCAGGC AAAGGAGATG CTTCAGACCA GCGAAGCTTT CGCCTATCCC TACGGCGATA CCACGGATGA CGCCATGACC TGCATCGACG AAGCCGGCAT CCTCTGCGCT TTCACCACTG AGAACCGCTG GGCACAAATT GGCGAAGACT GCCGGGCGCT GCCCCGAGTC CGCGTTTCGG GCGACTACAG CTTCGACGGG TTTGTATACC TGGTCACCAC ACCCCAATAA
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Protein sequence | MASYEYRGRE YRRQKPTRRK PKAKTENVGN MGAWPAFADD TDPKAGGGAW PQASDYAADL DEWTAQRADD VEASSRRAVP RHAPEQAATT APKSTPIGRH ARIASDTENT AGNASVARAR HAAHAAATGP VAVSARSAAT IGPTAPRFAA ANTPAEQPVE TRVPTPAIVD THATAVMTPL DAATANTESP SPVVENEPLA SEAGNQNARP QRPSTRNHGL VADDAGDSDL VAAAPVPFQR TPKRRSRKGL VAAVLAIALI AMGAGGFFML NRGSDAETNA TPTPAVSQNQ SENASASDTQ STEPETTDEG SGTSAAAPAD PGDIVIGVNG DPDTYVLVGE EYIEGGAHAA EPIDGILNNA IETNGDVDTS TPGDYEVTYT VSDSTGHTAT ATRTVHVVDS METQEYGIPV LMYHYVYTED DLPDEVNVNY ILDTDLANQL NYLQENDFYY PSYPEVRAFL EGAHSLPAKS VVLTFDDGQS GFLAYGIPLL EEYGVPATSF VICSNDNAES IPIDHASPVI SYQSHSYALH QGGGSVGHGG IISALSHEDI VADLNQAKEM LQTSEAFAYP YGDTTDDAMT CIDEAGILCA FTTENRWAQI GEDCRALPRV RVSGDYSFDG FVYLVTTPQ
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