Gene Shel_05790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_05790 
Symbol 
ID8394471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp675966 
End bp676700 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content59% 
IMG OID644985341 
Producthypothetical protein 
Protein accessionYP_003142987 
Protein GI257063315 
COG category[S] Function unknown 
COG ID[COG4200] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.782546 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGACCT CTGCAATCCG GGCCGAGCTG ATCAAACTCA GGCGAGCTCC CATCTGGGTG 
GCGTTCGTCG CGCTGCCGCT CATCGCTGCG GCCATCGGCA CGTTCAATTA CGAAAGCAAC
ATCGAGATTC TGCAGCTCGG TTGGCTGGAT CTATGGACGC AGCACACGTT GTTTTTGAGC
ATGTTCTTCC TTCCGGCTTT GGTGGGCGCT TCGTGTTCGT GGCTCATGCG GCTGGAGCAT
TCCGGCGGCA ACTGGAACCT GCTGGTGGCG TCGCCTGTCG GCGTGATGCG GCTGATTCTT
GCGAAACTGC TGGTCGGATG GCTCATGTTG GGAGTTGGCC TTGTTGCAGT GGGTGCGCTC
TTCGTGGGCT TCGGCAAGCT GGCGGGCATG TCCGGCATGC CTGATGCGCA GTATGCCGTG
TGGCTGCTGT TCGCCTGGGT GGGCGGTATT GCGTGCGTTG CGTGGCAGTT GTTCTTCTCG
TTGGTCATTC GCAGCTTCGC AGCGCCGGTC GGCATTGCGG TCGCAGGCGG TCTTGCAGGT
TTCTTCATGT ATGCCCGTGG AATTTGGTTC GCATGTCCGT ATTCCCTCAT GACCAGGGCT
TTGAACAGCA ATGGTATTGA AGCTTTGACT TCGGGCGATG CCGTCGTGCT TGTGGTGGTG
GCGGTTTTGT ACACGGCTGT CGCGGTAGGC TCGTCGGTGT TCCTCCTCTC GAAAAGCGAC
GTTCGCGGCG CGTAA
 
Protein sequence
MRTSAIRAEL IKLRRAPIWV AFVALPLIAA AIGTFNYESN IEILQLGWLD LWTQHTLFLS 
MFFLPALVGA SCSWLMRLEH SGGNWNLLVA SPVGVMRLIL AKLLVGWLML GVGLVAVGAL
FVGFGKLAGM SGMPDAQYAV WLLFAWVGGI ACVAWQLFFS LVIRSFAAPV GIAVAGGLAG
FFMYARGIWF ACPYSLMTRA LNSNGIEALT SGDAVVLVVV AVLYTAVAVG SSVFLLSKSD
VRGA