| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_01080 |
|---|
| Symbol | |
|---|
| ID | 8394000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 138751 |
|---|
| End bp | 139968 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644984881 |
|---|
| Product | 3-oxoacyl-(acyl-carrier-protein) synthase II |
|---|
| Protein accession | YP_003142531 |
|---|
| Protein GI | 257062859 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.285513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAACGG GCTTGGGCGT CGTGAGCCCG CTCGGAAGCG ACATGGATAC GTTTTGGAAG
AACGTGACGG ACGGGGTGTG CGGCATCGGA CCCATCACCC GTTTCGACAC GTCGCAATAC
AAGGCCAAGG TGGCGGCCGA GGTGAAGGAT TTCGACCCCG CGCAATACCT GAGCACGAAC
GAGCTGCTGC GCACCGACCT GTACGCGCAG TATGCCATCG GCGCCGCGGA GCAGGCCGTT
AGCGAAAGCG GCATTGTGGG CACGCTGCCT CCCGACCGCT TGGGCGTGTA CTTCGGGTCG
GGCATCGGCG GTTTGGAAAC CGTCTGCTCA GGAGTCGCCA AGCTCAACGA GCAGGGTCCC
CGCCGAGTGT CCTCGCTGAT CATCCCCATG ATGATTGCGA ACATGGCCGC AGGTCTCATC
GCCATCCGCT ACGACTGCCA GAATGGCGCC ATGCCGGCGG TCACGGCGTG CGCGACCGGG
TCGAACGCCA TCGGCGAGGC CGTGCGCACC ATCCGCCACG GCTACGCGGA CGCCGTCATC
GCGGGCGGCT CAGAGGCATC CATCGTTCCT TTGGGCGTCG CCGGGTTCGT GAACATGCGC
GCCCTGTCCA CGGCGGACGA CCCGATGGCC GCATCCCTTC CCTTCGATGC GCGCCGTGCC
GGATTCGTCA TGGGCGAAGG CGCCGGTGCG CTGGTGCTGG AAGAGCTGGA GCATGCGCGC
GCCCGTGGAG CGCACATCTA CGGCGAGATC AGCGGATACG GCTCCACCTG CGACGCCTAC
CACATGACCG CTTCGCACCC CGAAGGCGAC GGCGGCAGGC GGGCCATCGC GCAGGCGCTC
GAAGAGTCCG GATACACGGG CGACGAGCGT CTGTACATCA ACGCGCACGG GACGGGTACG
CCCATCAACG ACGCATGCGA AACGCTGGCC ATCAAGGGCG CGCTCGGTCA GGAAAAGGGC
CGCGAGGCGC TGGTCAGCTC CACAAAGTCG ATGACCGGGC ACATGCTGGG CGCAGCGGGC
GCCGTTGAGG CGATCGTGTG CCTGAAGGTG CTGCAGACGG GCATTGTTCC GCCCACCATC
AACCTGCTCG AGCCCGATCC GGAATGCGAT TTGAACCACG TTGCGCAGAC GGCTGTGCAG
GCGGAAATCG ACCTGTGCCT TTCGAACTCC CTCGGATTCG GCGGGCACAA TGCAACCTTG
GCGTTCAGGA AGGTGTAG
|
|---|
| Protein sequence | MVTGLGVVSP LGSDMDTFWK NVTDGVCGIG PITRFDTSQY KAKVAAEVKD FDPAQYLSTN
ELLRTDLYAQ YAIGAAEQAV SESGIVGTLP PDRLGVYFGS GIGGLETVCS GVAKLNEQGP
RRVSSLIIPM MIANMAAGLI AIRYDCQNGA MPAVTACATG SNAIGEAVRT IRHGYADAVI
AGGSEASIVP LGVAGFVNMR ALSTADDPMA ASLPFDARRA GFVMGEGAGA LVLEELEHAR
ARGAHIYGEI SGYGSTCDAY HMTASHPEGD GGRRAIAQAL EESGYTGDER LYINAHGTGT
PINDACETLA IKGALGQEKG REALVSSTKS MTGHMLGAAG AVEAIVCLKV LQTGIVPPTI
NLLEPDPECD LNHVAQTAVQ AEIDLCLSNS LGFGGHNATL AFRKV
|
|---|
| |