| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_3861 |
|---|
| Symbol | |
|---|
| ID | 4457821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 4713846 |
|---|
| End bp | 4715093 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639704634 |
|---|
| Product | AAA family ATPase |
|---|
| Protein accession | YP_847965 |
|---|
| Protein GI | 116751278 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1373] Predicted ATPase (AAA+ superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0363925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG AGACCTTGCA TCCCCGTTTT CTGCGCCCGC GCATTGAGGA GGCCCTGGCG
GATTCGCCGG TGGTGCTGAT CCACGGCCCG CGGCAGTGCG GCAAGACTAC GCTGGCCCGA
CTGGTGGGGG ATGATTCGGG GTTTGCCACC TTCACCTTTG ATGACGATGT GCAGCGGGCG
GCGGCACAAG CGGATCCGGT CGGCTACGTG GCCGATCTGC CGGAACGGGC GGTGCTGGAC
GAGGTACAGC GGGTCCCGGA GCTGTTCACA TCGCTCAAGG CAGCTGTGGA TACCCGGCGG
AAACCCGGCC GGTTTATCCT GACGGGGTCG GCCAATGTGC TGCTGGTGCC CAAGCTTGCG
GATTCGCTTG CCGGCAGGAT GGAGATTCTC CGGCTCCATC CCTTGTCGCA GGCGGAGGTG
GAGCGGAAAA CGCCTGATTT TCTGCGCCGG TTATTCGCCG CAGGTTTAAA GGCTGGGCCG
TCCGGGCGCC GCCTGGGCAA GGCCCTTTCC GAGCGGGTGG TCGGCGGCGG TTTTCCGGCG
GCCCTGGCGC GTGCCAACCA GCGCCGCCGT ACCGCCTGGT ATCGGGATTA CGGTGACACC
CTGATTCAGC GCGATATCCG TGACCTGGCG CGTATCAGCG CCCTGGACGC GCTGCCGCGC
CTGCTGGCGC TGGCCGCGGG GCAGACCGCG TGTCTGATGA ACGTCTCCGA GTTGGCGGCT
CCGTTCCAGA TCAGCCGTCA GACCATTCGC GAATACCTGA CGCTGTTGTC GAGAATCTTC
CTGCTGGACG AATTGTCCCC CTGGCACGGC AATCGGATGA AGCGTCTGGT GAAGACGCCC
AAGCTGCATA TGGGCGACAC CGGATTGGCC TGCGCCCTGC TGGGGTTGAA CGGCGATACC
TTGTGGGCGG ACCGTTCGCT TTTCGGTCGG CTCCTGGAAA CGTTCGTCTA TCAGGAGTTG
CGCAGGCACG CCAGTTGGCG GGAGGTGGCG GTGGCTTTCA GCCATTTCCG CGACAAGGAC
CAGGTGGAAG TGGATGTGGT GCTGGAATCG GAAGGGCGCG TGGCCGGGGT GGAGGTGAAG
GCGGCCTCAA CCGTGACCGG CGATGATTTC AAGGGTTTGC GCAAGCTGAG AGACGCTGTG
CAAAAGAATT TCGCCGCCGG GGTGGTGCTC TACGATGGCG ATGCCGTGGC GGGCTTTGGC
GACCGGCTCC ATGCCGTACC CATCTCACAG TTATGGGAGG GCGACTGA
|
|---|
| Protein sequence | MSQETLHPRF LRPRIEEALA DSPVVLIHGP RQCGKTTLAR LVGDDSGFAT FTFDDDVQRA
AAQADPVGYV ADLPERAVLD EVQRVPELFT SLKAAVDTRR KPGRFILTGS ANVLLVPKLA
DSLAGRMEIL RLHPLSQAEV ERKTPDFLRR LFAAGLKAGP SGRRLGKALS ERVVGGGFPA
ALARANQRRR TAWYRDYGDT LIQRDIRDLA RISALDALPR LLALAAGQTA CLMNVSELAA
PFQISRQTIR EYLTLLSRIF LLDELSPWHG NRMKRLVKTP KLHMGDTGLA CALLGLNGDT
LWADRSLFGR LLETFVYQEL RRHASWREVA VAFSHFRDKD QVEVDVVLES EGRVAGVEVK
AASTVTGDDF KGLRKLRDAV QKNFAAGVVL YDGDAVAGFG DRLHAVPISQ LWEGD
|
|---|
| |