Gene Sfum_3084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_3084 
Symbol 
ID4458599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3793080 
End bp3793679 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content63% 
IMG OID639703855 
Product3-octaprenyl-4-hydroxybenzoate carboxy-lyase 
Protein accessionYP_847192 
Protein GI116750505 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase 
TIGRFAM ID[TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.529493 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000927755 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGACAAAA AAAACATCAT CGTAGCAGTC ACGGGCGCCA GCGGAGCTCC TTACGCCGCG 
GAACTCCTGC TCTTCCTGAG TCGAGCGAAA TTCGCGGTTC AAGTGGTGGC ATCCGATGCG
GGCAAGCTGG TGTACGAGCT TGAAACCGGG ACGCGGCTCG ACCGGGTTCT CCCCGCCGAT
GCGCGACTCT ACGACGTGAA CGACTTCACC GCCCCGTTTG CGAGCGGCTC ATTTCCGTGT
GAAGGCATGG TGGTCGTCCC GTGCACCATG GGCACGCTCG GCGCCATCGC CTCCGGCATT
TCGCAGAACC TCATCCACCG CGCCGCGGAC GTCTGCCTCA AGGAACGACG CAGACTCATC
CTGGTTCCCC GCGAAACGCC GCTGAACCAG ATCCATCTCG AGAACATGCT CCGGCTTTCC
CGTGCCGGCG CGATCATCGT CCCCGCCATG CCCGGGTTCT ATCACCGTCC GCAGTCCGTC
GCCGAGCTGG TCCGGTTCGT GGTTGCGCGA ATCCTCGAAC AGCTCGGCAT TCCGCAGGAC
CTGCTCGAAC CGTGGGACGC CCGAAAACTC CGGCCCCCCG ATCCGATTCA TGAAGCGTGA
 
Protein sequence
MDKKNIIVAV TGASGAPYAA ELLLFLSRAK FAVQVVASDA GKLVYELETG TRLDRVLPAD 
ARLYDVNDFT APFASGSFPC EGMVVVPCTM GTLGAIASGI SQNLIHRAAD VCLKERRRLI
LVPRETPLNQ IHLENMLRLS RAGAIIVPAM PGFYHRPQSV AELVRFVVAR ILEQLGIPQD
LLEPWDARKL RPPDPIHEA