| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2786 |
|---|
| Symbol | |
|---|
| ID | 4458880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3435130 |
|---|
| End bp | 3436893 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639703557 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_846899 |
|---|
| Protein GI | 116750212 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTC CATCCATTCA GAGACCTCGC GTTCTATCGG TTCTTCTTGT GCTCCTGTTT
TTGTGCTGCG GGTCCCAGTG TTATGCGGTT CCAAGTGAAG CGGTGAGCCG GCAGGAACAC
GGCGCCGCCC CACCAGGAGG TTCCGCTGCG GAGGGGGCGC TTTCGCCTCG GTGGCGGTCC
GCGATATGGG AGACCATACC GCCGGAATGG CTGGGCTCGC CCACTCCGAA CACCATCCTG
CAAGCCTACC AGGAGAATGG GTGGACGCCT TTCTTTATAA CCTCCACGTT CGAGCTCGCC
CAGGGCGCGC ATGCGCTTCT CCGGCGGGCG GGGGAGGCGG AGAAGGAGGC CCTGGACCCT
AAGCCGCTCC GCATCGAGGA AGTCCGGCAG CACGTGAAGC ACCTCGAGCA GGCGCGCGAT
TCCGCCAGCG CGCTGCTCCC CAACCTGTCC GACTCGATCG CCGATCTGTC CGTCCCGTCC
GGCGACCAGC CCGCGGCGCC CGGCAGCCCC GGGATCCAGC CGGTCAATCC CGCGGTGGTG
AAGGCGAGAG AAGAGAGGTA TAGGAATCTC TTCCGCGTTG CCGTCGAAGC GGATGTCAAA
CTGGCGGAAC TGCTGGTGCG CTTCTCCGGC CAGATGGACC CGTTCTCCGG AGAAGATCAG
GTCAAGGCGC TCTCGGGCCG GATTCCGATG AGCGATTACC TGAAGCGCCT GGAACCCAGG
TCGCCTCATT ACCGCCCGCT GCTGAACGCT CTCGCAAGGT ACCGTGACCT GGCCGCCAAC
ACCACGCAGC AGCAGGTCCG GGCCCCCTCG ACAATGAGAC CCGGCGAGTC CGGCAACGCG
GTGCGCGATC TGCAGAAGAG GCTGCGGCAA GAGGATTTCT ACCGGGGTGA GATCACGGGG
ACCTTCGACG CCGCCACTCA GCAGGCGGTG AAGCGTTTCC AGGCAGCGCA CCAGATCGAG
CCCGACGGAG CGGTGGGGCA GCGGACCCGC GAATGGCTCA ACATGCCTTT CAAACAAAAG
GCCGAGATGA TCGCTCACGG GATCAATCTC CTCCGCCAGA GCCAGACCCG TCGGAGCGAC
AGGTACGTGC GCATCAATAT TCCCCAGTTC GCCCTGGAAT ATTACAAAGA CGGGCAATCA
CTGTCGAGCC ACCGCGTGAT CGTGGGCAAG GCGTCGGGCA AGAAGGTCAA GGTGCTGGGC
AAATGGATGA GGGAAAACCA GACTCCGACG CTCACGAGCA ACATCGAGCA GGTGATCATC
AATCCGCGCT GGTACGTTTC GGACCGTATT CGCCTGGAGC TGGACGCCCA GGCAGGTTCC
GACCCGCAGT ATTTCGCCAG GCACGGCTAC GTTCAAATGG CGTCCCTGTA CCCGTGGGGA
CAACCGCGGC TGTTCCAGAA ACCGGGTCCC AAGAACCCGC TGGGACAGAT CAAGTTCGAA
TTCCCCAACC CGTACGCCGT CTACCTGCAC GACACCAACC AGAAGTCCCT GTTCCAGAGG
ACGCGCAGAG ACTTTTCGCA CGGGTGCATC CGGGTGGAAA AGGCCAAACA TCTGGCCCAT
TTGCTCTTGA AGGACGACCA GAATCCCCTG GCCGACAAGA CGGAGCCCTA CCTGTCCTCG
GACCGCCAGC TTTTCATCAA GCTTGCCACG CCCGTTCCGA TCATTATCGA ATACCTTCCC
GTTTCATGCA ACGAAGACGG TCAGGTGATT TTCTTCGGGG ATCCTTACGG ATGGCTCGCC
GAAAACGCCA ACGCCAAGGG CTGA
|
|---|
| Protein sequence | MSTPSIQRPR VLSVLLVLLF LCCGSQCYAV PSEAVSRQEH GAAPPGGSAA EGALSPRWRS
AIWETIPPEW LGSPTPNTIL QAYQENGWTP FFITSTFELA QGAHALLRRA GEAEKEALDP
KPLRIEEVRQ HVKHLEQARD SASALLPNLS DSIADLSVPS GDQPAAPGSP GIQPVNPAVV
KAREERYRNL FRVAVEADVK LAELLVRFSG QMDPFSGEDQ VKALSGRIPM SDYLKRLEPR
SPHYRPLLNA LARYRDLAAN TTQQQVRAPS TMRPGESGNA VRDLQKRLRQ EDFYRGEITG
TFDAATQQAV KRFQAAHQIE PDGAVGQRTR EWLNMPFKQK AEMIAHGINL LRQSQTRRSD
RYVRINIPQF ALEYYKDGQS LSSHRVIVGK ASGKKVKVLG KWMRENQTPT LTSNIEQVII
NPRWYVSDRI RLELDAQAGS DPQYFARHGY VQMASLYPWG QPRLFQKPGP KNPLGQIKFE
FPNPYAVYLH DTNQKSLFQR TRRDFSHGCI RVEKAKHLAH LLLKDDQNPL ADKTEPYLSS
DRQLFIKLAT PVPIIIEYLP VSCNEDGQVI FFGDPYGWLA ENANAKG
|
|---|
| |