| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2454 |
|---|
| Symbol | |
|---|
| ID | 4459239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 3032273 |
|---|
| End bp | 3033454 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639703220 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_846569 |
|---|
| Protein GI | 116749882 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCC CCGGTGCATA TCGCGTAAAA TGCCGGATAT GCGTCGAACT GACTGGCATG
TTGAAATATC CTGATGAGGT GATTATGCCG TCAAGGGCAC TGCTCCTGTC GATCACTCTT
CTTTTTCTCG TCTCGACCTC ATGTCGGGAT TCGGAGCAGT CTGCCGGGAA AACCGGACAG
GTGCCGGATG TCGTTTCCGT GCGCGTGCAG ACCGTTCAAA AGAGCAGGCG GGCATCCGTT
TTCAATGCCG GCGGCACTGT GGAAGCAAGA GAAAAGGTGG ACCTTGCGTT CAGGGTTCCC
GGTAAGGTGG TCCAAGTGCA CTTCAAGGAA GGCGATGCGG TGAGGGCGCA ACAGGTCGTT
GCCGAGCTCA ACGCGGTGCC GTTCAAACAG GCCGTCGACG CCGCCATCGA CAAAAGCGCC
GAGGCTCGGG TCAAGGCCAC ACGGGCTGAG GCCAAGTATC GCCACATGAA ACGGCTCTAC
AAGAAGAAAA GCCTTTCTCC CAGCGATTTC AAGAAGTATG AAACGGCGAG CGAGGCTGCC
AAAGCGGCTC TGGTTCGCGC CGAAAGCAGA CTCCGGGCGG CCCGCAGACG CTTGACGGAG
ACTCGGCTCA CCAGTCCGAT CAAGGGCGTG GTGGTGAGTC GCCGGGTCAA GCCGGAACAA
ACGGTCGTCG CCGGGTATCC GGTGTTCACC GTTGTGGACA TCGATCGTGT GAATGTGAGG
GTGACCGTTC CGGAGCAAGA GATCGTTCAT TTTCGACAAA ATCAATCCGC CAGGGTTCTG
ATTCCTTCTT TGCCTGGACG GACTTTTCCC GGCGAGGTGA AAATGGTGGG CTTGAGGGAG
GATCCCGCAA CAGGTGGCTT TCCCCTGAAA ATCGAGGTGA ACAACCCTAA GCGAATCCTG
CGCGACGGGA TGAGCGCCGA GGTCTGCATC GAGAATGACA AGACCGTGGA TATCCTTACG
GTCCCCGGAA AAGCCGTCGT TCGGAACGAT CAGGGCGTCG CCGTGGTTTA TGTCTGCGTT
CCGGAGCAGA AAAAGGTTTT TGCCCGGCCG GTTGAAACGG GTGCGGAGTC GGGCGAGACG
ATCGAGATCA AGAAGGGCTT GACGGGTGAC GAACGGGTTG TGATCGAAGG AGGGGAACAT
CTCGTCGACG GAGCCGTTGT GAACATTGTG AAGCAGGAAT AG
|
|---|
| Protein sequence | MAAPGAYRVK CRICVELTGM LKYPDEVIMP SRALLLSITL LFLVSTSCRD SEQSAGKTGQ
VPDVVSVRVQ TVQKSRRASV FNAGGTVEAR EKVDLAFRVP GKVVQVHFKE GDAVRAQQVV
AELNAVPFKQ AVDAAIDKSA EARVKATRAE AKYRHMKRLY KKKSLSPSDF KKYETASEAA
KAALVRAESR LRAARRRLTE TRLTSPIKGV VVSRRVKPEQ TVVAGYPVFT VVDIDRVNVR
VTVPEQEIVH FRQNQSARVL IPSLPGRTFP GEVKMVGLRE DPATGGFPLK IEVNNPKRIL
RDGMSAEVCI ENDKTVDILT VPGKAVVRND QGVAVVYVCV PEQKKVFARP VETGAESGET
IEIKKGLTGD ERVVIEGGEH LVDGAVVNIV KQE
|
|---|
| |