| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_2234 |
|---|
| Symbol | |
|---|
| ID | 4459465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2743926 |
|---|
| End bp | 2745071 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639703000 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_846351 |
|---|
| Protein GI | 116749664 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.730665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGAT ACCTCGGGGT GGTCCTGGCC ATCACCGTGG GGACCGCCGG CTTCATCGTG
GTCATAACGA TGGGGCAGGA GGTCAAGAAA ACGCTCAATA CGGACCTGGA CCTGCTGGGG
GGAGCGACCC TCGTCAAAGT GCGTTTCGAG GAATACCTGC CCAACCGCGA TCGGTTCTCC
AAGCCTCCCA CATTCCAATC CGAGACGGTA AACGCCCTGA AGACCATGCA GGGGGTGCAG
GCGGTGAGTG CGGCCGCCGC AAAAATGACC TGGGGCACTT CCACGTGGTA TAATGCGCGT
CGTAGTTTCG CCGTACTGGC CGCCGACGGC CTTTTCTTCA GAGTGAACGG CCTGGCGCCG
GTCTCGGGGG AGCTGTTCGG CGCGGATGCC GTGAATGAAC GGGCCCGGAT CGTGGTGATC
GGGGAAGAGC TGGCGCGGAG CCTGTTTGAG ACCGCCGACG CCACGGGCCG GATTCTGCCC
ATCGACAAGG ATCTTTTCCT GGTCACCGGA GTGCTTGGGG GGACCCTGGC CGGCGACCGG
GTCAATTCCG CCTTCATTCC GCTCACGACC GGCCGGGATC GCCTTGAAAA TCTCGGTCCC
GTGGACCGCC TCTACATCCG CTGTTCTTCC TGGGACGACG TCGCCAGAGT GGCCGAAGCG
GTTCCCGCAA TGGTGGGAAT GCATCAGTCG GCCGAAAGGC TGCGGGTCGA TGTCGCCTGG
GATCCGTTGA AGCGTGTCCA ACGGATTGCC TGGTGGATCG AAGTCTTTGT CTACCTCGCC
ATAGTCGCAA CCCTGGTGCT CGGGGGGTTC GGAATCTGGA ACGGGATGAT GGCGGCCGTG
CAGGCCAGGA CCCGGGAGAT CGGCCTGAAA AAAGCGATGG GCGCGGAAGA CAGGGATATC
CTGATTCAGT TCCTGATCGA ATCGCTGTTC CTCAGTTCCG GTTCCGCCGC GATGGGCGTC
CTTCTGGGAC GGGTGTGCGT CGAGACGATG AGCTCCTTTC TGAAATGCCG CCCTCCCGAG
GAATTGTTTG CAACCTGCGT GATGATGGGG ATCGGTTTTT CGGTTTTGCT GGGGATAGGG
GCCGGATTCT ATCCGTCTTT GCGAGCCAGC CGCATGGAAG TGGTATCTGC GATCCGGTAT
GAATAA
|
|---|
| Protein sequence | MRRYLGVVLA ITVGTAGFIV VITMGQEVKK TLNTDLDLLG GATLVKVRFE EYLPNRDRFS
KPPTFQSETV NALKTMQGVQ AVSAAAAKMT WGTSTWYNAR RSFAVLAADG LFFRVNGLAP
VSGELFGADA VNERARIVVI GEELARSLFE TADATGRILP IDKDLFLVTG VLGGTLAGDR
VNSAFIPLTT GRDRLENLGP VDRLYIRCSS WDDVARVAEA VPAMVGMHQS AERLRVDVAW
DPLKRVQRIA WWIEVFVYLA IVATLVLGGF GIWNGMMAAV QARTREIGLK KAMGAEDRDI
LIQFLIESLF LSSGSAAMGV LLGRVCVETM SSFLKCRPPE ELFATCVMMG IGFSVLLGIG
AGFYPSLRAS RMEVVSAIRY E
|
|---|
| |