| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1989 |
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| Symbol | |
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| ID | 4459690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 2432724 |
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| End bp | 2434856 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639702755 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_846107 |
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| Protein GI | 116749420 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAGAC TCGATACGTT TCCCCCTGAA ATACCAACGG GTTCCCGCGA CAAACCACCG
TCCGGGGAAG AACATTCCTG TTCGACCCCA GCGGAGCCGT TGAGGTCACG GCTGGACGAG
GGAATTCTCC GCGCGGTCGA CTGGCTGGTT TGCGATCAGC ATCCCGATGG ATTCTGGGCG
GGAATGCTTC AGTCCAATTC CTGCATGGAA GCGGAGTGGG TGCTCGCCAT GCATTTTCTG
GGCATCGACG ATGACCCGAA ATACGACGGG GTAATTCGCG CGATACTTGG CGAGCAGCGG
GCGGACGGTT CGTGGGGTGT TTTCCATAAA GCGCCCAACG GCGACATCAA CACGACGGTT
GAGTGTTACG CAGCGCTCCG CGCTTCCGGG CTGGCCCCCG AGAGCGCCCC CCTGAGCAGT
GCCAGGGAAT GGATTCTTGC CGGCGGGGGG CTCGCGAACA TCCGTAATTT CACCAAGTAC
TGGCTGGCCC TGATTGGGGA ATGGCCCTGG GAAGGCACGC CGACCATTCC TCCCGAGCTG
ATCTTTTTCC CTCCCCGGAT GCCGTTGAAC ATCTATCATT TCGCTTCCTG GGCGCGCAGC
ACCATCGTTC CGCTGTCGAT CCTCTCCGCC CGGCGCCCGG TGAGGCCGCT GCCCGAGGAC
CGCAGGCTCG ACGAATTGTT CCCCCAGGGG CGCTCCGCAT TCGACTTCAG ATTGCCGCGA
AAGGACGGCT GGCTTTCATG GGAAGGCTTC TTTCACGTGT GCGATCGCAT TTTGCGCCTT
TATGCGCGCA CGCGCCGTGC TCCGTTTCGG GAAACCGCCA TCCGGGTATG CCTGGAATGG
ATCATCCGAC GCCAGGAAAC CGACGGGGCA TGGTCGGGCA TTCAGCCCCC GTGGATCTAC
GCCCTGCTGG CGTTGCACGC CGAGGGCTAC GGACTCGATC ACCCGATCCT GAGGGCGGGC
CTGCGCGCTT TCGATTCTCA CTGGTCCTAT GAGCGCGACG GAGGCATCTA CCTCCAGGCC
AGTGAATCTC CCGTATGGGA CACGGTATTG TCGCTCCGCG CCCTGGCCGA CTGCGGCGAG
GAACGGAAAG CGTCCGTTTC GATCGCTTCC GCTCTGGAGT GGCTGCTGAA CAGGCAGATC
AGCGTGCCTG GCGACTGGGC TGTCCGTGTC CCCAGTGTTC CCTGCGGCGG TTGGGCTTTC
CAGCGCGCCA ACAGCTTCTA TCCGGATGTG GACGACACGG CGGTGGCGAT CGAAGTGCTC
GCAAGGCTGA GGCCGTTCAC GGCGAACCAG TCGGCCGTCG ACCGGGCGAT CCGTAGCGCC
AGGGACTGGG TTCTCGCCAT GCAGTGCTCT AACGGGGGAT GGGCGGCCTT CGACCGGGAC
AATGATTTCA AGCTGGTGAC CAAGATTCCC TTCTGCGACT TCGGAGAGTT GCTGGATCCG
CCGAGTGTCG ATGTGACCGC GCATGTCATC GAGGCTTTGG CCGCGCTGGG CTGGGACATG
ACATCGAGGG AAATCGAGGC GGCCGTGAGT TTCATTCGAC GGGAGCAGGA AGCTGAAGGA
AGCTGGTTCG GAAGATGGGG TGTGAACCAC ATTTACGGAA CGGCGACGGT ATTGCCGGCC
CTGCGGGCCA TCGGCGAAGA CATGTCGTCG GCCTATGTGC TCCGGGCGGC CGACTGGCTG
GCGTCCCGCC AGAACGCCGA CGGCGGATGG GGAGAGACGC CGGCTTCCTA CATGGACGAC
TCCCTGCGCG GCGTCGGGGA AAGCACGGCA TCCCAGACGG CCTGGGCGAT CATGGGCCTG
GTGGCGGTGG GCAGCGGCGC CCACGACGAT ACCGTCCGGC GCGGAATCGA TTTTCTGCTG
TTCGCCCAAC ATGGCGGTAC GTGGGAAGAA CCGCAATACA CCGGAACCGG ATTCCCCGGG
TACAGTGTGG GAGAACGGAT ACGCCTCCGG GACATGGGCG CCTCACTGAA GCAGGGCACC
GAGCTCCAGC GCGCGTTCAT GATCAACTAC AACCTGTATC GACATTATTT CCCGCTGATG
GCCCTCGGCC GCGCCAGGTA CCACCTGCAG CTGCGGCGGT CCGCCAGGGA GGGCGGGAAT
GGCGAGACCA CCCCGAACGG TTCTGCATTG TGA
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| Protein sequence | MRRLDTFPPE IPTGSRDKPP SGEEHSCSTP AEPLRSRLDE GILRAVDWLV CDQHPDGFWA
GMLQSNSCME AEWVLAMHFL GIDDDPKYDG VIRAILGEQR ADGSWGVFHK APNGDINTTV
ECYAALRASG LAPESAPLSS AREWILAGGG LANIRNFTKY WLALIGEWPW EGTPTIPPEL
IFFPPRMPLN IYHFASWARS TIVPLSILSA RRPVRPLPED RRLDELFPQG RSAFDFRLPR
KDGWLSWEGF FHVCDRILRL YARTRRAPFR ETAIRVCLEW IIRRQETDGA WSGIQPPWIY
ALLALHAEGY GLDHPILRAG LRAFDSHWSY ERDGGIYLQA SESPVWDTVL SLRALADCGE
ERKASVSIAS ALEWLLNRQI SVPGDWAVRV PSVPCGGWAF QRANSFYPDV DDTAVAIEVL
ARLRPFTANQ SAVDRAIRSA RDWVLAMQCS NGGWAAFDRD NDFKLVTKIP FCDFGELLDP
PSVDVTAHVI EALAALGWDM TSREIEAAVS FIRREQEAEG SWFGRWGVNH IYGTATVLPA
LRAIGEDMSS AYVLRAADWL ASRQNADGGW GETPASYMDD SLRGVGESTA SQTAWAIMGL
VAVGSGAHDD TVRRGIDFLL FAQHGGTWEE PQYTGTGFPG YSVGERIRLR DMGASLKQGT
ELQRAFMINY NLYRHYFPLM ALGRARYHLQ LRRSAREGGN GETTPNGSAL
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