| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0372 |
|---|
| Symbol | |
|---|
| ID | 4461605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 444786 |
|---|
| End bp | 445895 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639701127 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_844507 |
|---|
| Protein GI | 116747820 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
|---|
| TIGRFAM ID | [TIGR02195] lipopolysaccharide heptosyltransferase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTTT TTCACCCGAC TTTCAAATGG ATCATCCGAA AGATTTCCGG GCGAATGCCG
CCGCCTCTCG ATCTGGAAAC CTTTCGCCCC GACGCGGTCA ACAGCATCCT GATCGTCTCC
TCGACGGCCA TCGGCGACGC GCTGATGTCC ACACCGGCCA TCCGGTCAGT CCGGACGTCC
TATCCCGAAG CCAACATCGT CCTTCTGGCA AGGCACCGGT ACCGCGAGCT GTTCGAGAAC
AACCGGCACG TGGACAAGAT CGTCTCCTAT CACGGGGGGT ATAAGAAGTT TCTGCAAACC
GTGCGATTAC TCCGCAAGGA AGCCTTCGAC CTCGCCGTCA TCCTGCACGG CAACACGCCT
CAGGCGGTTC CCCTGGCTTA TCTCACCGGG GCTCGCCACC TTGTGACCCT CCCCGTGGAA
CGGGAGTTCG CCTACCTGAT CTCCAACCGC AACGGGGACC ATTCCTCCCG CCTCCCGCAG
CACACCATAA GGCAGCGGCT GGGCATAGCG CAGCTCGCGG GGGGCGCCGG CACGTCCGTG
GACATGGAGC TCGAGGTGAC CGGCGAGGCG CGACGGCAGG TCGATGCGTG GCTCCACGGC
GCAGTGGATA TTCCCGACCC GCTCCTTGTC GGCTTCCAGG CGGGCGCCTC GAAACCGTAC
AAACAATGGC CGGTGAAATC CTTTGCGGAG CTTGGGAAAA GGATCCTGGC GTCGCACCCC
CGCGCCCGCA TTTTCGCGAT CGGTTCGCCG AAGGAAAAGG CGCTGTGCGC CGAGGTCGTG
CGAGCCATCG GGTCCGATCG GGCCGTCTCC GTTGCCGGTC GTTTTCCCCT GACGCAGGTT
GCGGCACTCA TCGGGAGACT CGAGCTCCTG GTCACCAACG ACACGGGGGC GATGCACATC
GCCATCGCCT TGAAGACAAA GACGGTGTCC CTGTTCTGCC CGACCTCTTC CCGCGTGTCG
GGGGCCATCC AGGACCCCGT GTTGCACCGG GCCATTGAGA AAGACCTTCC GTGTCGCCCG
TGCATCGGCA AGAAATGCAC TACCCCCTTC TGCATGGAGC AGATCACCGT GGAGGAGGTC
TTCCGGGCTT TTCGCGAGTT CGAATGTTAG
|
|---|
| Protein sequence | MRLFHPTFKW IIRKISGRMP PPLDLETFRP DAVNSILIVS STAIGDALMS TPAIRSVRTS
YPEANIVLLA RHRYRELFEN NRHVDKIVSY HGGYKKFLQT VRLLRKEAFD LAVILHGNTP
QAVPLAYLTG ARHLVTLPVE REFAYLISNR NGDHSSRLPQ HTIRQRLGIA QLAGGAGTSV
DMELEVTGEA RRQVDAWLHG AVDIPDPLLV GFQAGASKPY KQWPVKSFAE LGKRILASHP
RARIFAIGSP KEKALCAEVV RAIGSDRAVS VAGRFPLTQV AALIGRLELL VTNDTGAMHI
AIALKTKTVS LFCPTSSRVS GAIQDPVLHR AIEKDLPCRP CIGKKCTTPF CMEQITVEEV
FRAFREFEC
|
|---|
| |