| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4041 |
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| Symbol | |
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| ID | 4280932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4819752 |
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| End bp | 4820522 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136866 |
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| Product | transcriptional regulator, DeoR family protein |
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| Protein accession | YP_752705 |
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| Protein GI | 114565191 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.112055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAAAC GTAACACCCA ACAACGTCGT CATTCGATCA TTAAATTGGT TAATGAGCAA
GGCGAAGTCA GTGTCGATGA GTTGGCGAAT CTATTTGCCA CTTCAGAAGT CACTATTCGC
AAAGACTTAG CCATGCTTGA AACTCATGGA CTATTATTAC GACGTTATGG TGGTGCGGTG
CCTGTACCTC AAGAAATGAC CCAAATAGTC AGCGAAAACC TATCATTAAA TAAACAAGCT
ATTGCCGCTA AAGCCGCTGA GCTGATCCGC GACCATAACC GGATCATCAT CGACAGTGGT
AGCACTACAT CCGGAATTGT TCAGCAGCTT AATGACAAGC GTGGCTTGGT GGTGATGACT
AATTCGCTGC AACTGGCAAA CGCTATTCAT GAACTTGAAA ATGAACCTAC ATTATTGATG
ACCGGTGGCA CCTGGGACCC ACATTCGGAG TCTTTTCAGG GCCAAGTGGC AGAGCAAGTA
TTACGGTCAT ATAACTTCGA CCAACTTTTT ATCGGTGCCG ATGGTATCGA CCTCGATCGT
GGCACCACCA CATTTAACGA ACTAACCGGC TTAAGTAAAG TAATGGCTGA AATGTCTCGT
GAAGTCGTGG TGTTATTAGA GTCGACTAAA ATTGGCCGAC GGATCCCTAA TCTAGAATTA
CCTTGGGATG TGGTTAATGT CTTAGTTACC GACGACAACA TCACCCAAGA AGCCGTTAAC
ACTATTGCAG CACATGGTGT CAGAGTAATC CTCGCACCAT ACGCTAAGTA A
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| Protein sequence | MTKRNTQQRR HSIIKLVNEQ GEVSVDELAN LFATSEVTIR KDLAMLETHG LLLRRYGGAV
PVPQEMTQIV SENLSLNKQA IAAKAAELIR DHNRIIIDSG STTSGIVQQL NDKRGLVVMT
NSLQLANAIH ELENEPTLLM TGGTWDPHSE SFQGQVAEQV LRSYNFDQLF IGADGIDLDR
GTTTFNELTG LSKVMAEMSR EVVVLLESTK IGRRIPNLEL PWDVVNVLVT DDNITQEAVN
TIAAHGVRVI LAPYAK
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