| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3986 |
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| Symbol | |
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| ID | 4280877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4749815 |
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| End bp | 4752976 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136807 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_752650 |
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| Protein GI | 114565136 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.943465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGTCTC AATTCTTTAT TAAAAGACCT ATTTTTGCCG CGGTGCTGTC GCTACTGTTC
TTTATTTCAG GCGCGATCGC AGTATGGCAA TTACCGATTA CCGAGTATCC AGAGGTCGTG
CCGCCAACGG TAGTGGTGAC GGCAAACTAC CCAGGTGCTA ACCCTAAAAT CATTGCTGAA
ACCGTTGCAT CACCGCTAGA GCAAGAGATT AACGGCGTAG AAAACATGTT GTACATGTCT
TCGCAAGCCA CTTCAGATGG CCGTATGACG CTAACCATCA CCTTTGCGAT TGGTACTGAT
GTTGATTTAG CTCAAACCCA AGTCCAAAGC CGGGTAGAAC GAGCAAAACC TCGTTTACCA
GAAGAAGTAC AACGCTTAGG TATTGTCACT GAAAAATCAT CACCTAGCTT AACCATGGTG
GTGCATTTAA CCTCGCCCGA CGACCGTTAC GACATGTTAT ACCTGTCTAA CTATGCGGTA
TTGAAAGTAA AAGATGAATT AGCTCGTATT ACTGGTGTGG GTGCTGTGCG TGTGTTTGGC
GCTGGCGACT ACAGCATGCG AGTGTGGCTA GACCCTAATA AAGTAGCAGC AATCGGATTA
TCACCGAGTA ATATTGTTGC CGCTATTCGT GAACAAAACC AACAAGCCGC AGCCGGGAGT
TTAGGCGCGC AACCTAGTGG TGACAGTGAT TTCCAATTAC TGATTAACGT TAAAGGCCGT
TTATCCAACG TTGAAGAGTT CGAAGACATT ATTGTTAAAG TGGGTGATCA AGGTCAGATC
ACTCGTTTAA AAGATGTTGC CCGGGTTGAA TTAGGTGCAT CGACTTACGC CCTACGCTCA
ATGTTAGACA ATAAAGACGC GGCTGCATTA CCTGTGTTCC AGGCCTCGGG CTCTAACGCG
ATTCAAATAT CTGATGATGT CCGTTCTAAA ATGGCTGAGT TGTCTAAGTC ATTTCCAGAA
GGCTTAACCT ACGACATCGT CTACGATCCA ACCGTGTTCG TGCGTGGCTC AATTAAAGCT
GTGGTACAAA CACTGGTTGA AGCATTATTG CTGGTTGTAT TAGTGGTAGT GCTGTTTTTA
CAAACGTGGC GCGCATCCAT TATTCCATTA GTGGCGGTTC CAGTATCACT TGTGGGTACA
TTCGCCTTTA TGCACCTAAT GGGCTTTTCG CTGAATGCCT TATCACTGTT TGGCTTAGTG
CTCGCGATTG GTATCGTGGT CGATGATGCG ATTGTTGTGG TTGAAAACGT TGAGCGAAAT
ATCTCAGACG GATTATCGCC CGTTGCTGCC ACTCAAAAGG CAATGAAAGA AGTGACCGGT
CCGATTATTG CCACTACATT GGTACTGGCG GCGGTATTTA TTCCAACGGC ATTTATGTCA
GGCTTAACTG GGCAATTTTA TAAGCAGTTC GCGTTAACCA TTACCATCTC CACCTTTATT
TCGGCGATTA ACTCGTTAAC CCTTAGCCCT GCATTATCGG CATTATTGCT TAAAGGTCAT
CACGAGAAAA AAGATATGCT GACCCGTGGT ATGGATAAGC TGCTCGGAGG CTGGTTATTT
AATCCGTTTA ACCGCATGTT TGCGCGTATG TCTAACGGTT ACGGCTGGTT AGTGAAGAAA
ATCATTCGTT TTGGTGCTGT CATTGGTATT TTGTATATCG GTTTAGTCGG CTTAACAGGC
TTACAGTTTG CCAATACCCC AACAGGTTAT GTGCCTGGGC AAGATAAACA ATATCTTATT
GCCTTTGCCC AACTACCTGA TGCTGCATCA TTAGATCGCA CTGAAGCTAT CGTGAAAGAA
ATGTCACGTA TTGCACTAGA TCAACCGGGT GTAGCCCATG CTGTAGCCTT CCCTGGTTTA
AGCATTAATG GCTTTACCAA TAGTACTAAC AGCGCCATTT TGTTTACCCC GCTGGATGAC
TTTGCCGATC GCAAAGATCC ATCATTATCA GCAGGTGCTA TTGCTGCCGC GTTAAATCAA
AAATTTGCCT CTATTAACGG CGCATTTATT GCGATTTTCC CGCCACCGCC AGTGCAAGGC
TTAGGCACCA TTGGTGGCTT TAGATTACAA ATTCAAGATC GTGCTAATTA CGGTTACGAA
GAGTTGTATA AAGTGACCAT GCAAGTGATG CAAAAAGCAT GGGCAACGCC AGAGCTAGCG
GGAGTATTCT CGAGTTATCA AGTCAATGTG CCACAACTTG AAGTGAACAT CGATCGCACC
AAAGCCAAAC AGCAATCGGT GTCGTTAGAC GAATTGTTCT CCACCCTGCA GGGATACATG
GGTTCGGTTT ACGCCAACGA CTTCAACCAG TTTGGCCGTA CTTATCAAGT GAACGTACAG
GCAGATGAAC AGTTTAGACA AACGCCTGAA CAAATCGCCC AACTAAAAGT ACGTAACAAC
CAAGGTGAAA TGGTGCCTAT TGGATCATTT ATTAATGTCA CCAATTCATC TGGTCCAGAC
CGAGTCATGC ATTACAACGG TTTTACCACT GCGGAATTAA ATGGTGGTGC TGCACCCGGA
TTTAGTAGCG GTGAGGCGCA AGCTGCAATT GAAAAGATTC TAGCTGAAAC CCTACCTAAT
GGTATGACAT ACGAGTGGAC AGAGATCACC TACCAACAAA TTTTGGCAGG TAATGCAGGC
GCCTATATTT ACCCATTAAT TATCTTGTTA GTGTTTATGG TTTTAGCCGC GCAATATGAA
AGCTTAAGCT TACCAATAGC CATTATTCTG ATTATCCCAA TGACGCTGTT ATCGGCATTA
ACAGGGGTAC TTATTTACGG TGGAGATAAC AATATCTTTA CCCAGATTGG GTTAATTGTA
CTGGTGGGGC TGGCAACCAA AAATGCCATT CTAATTGTTG AGTTTGCCAA AGAGTTACAA
GATGATGGCA TGGAACCATT GGAGGCCATA CTTGAAGCCG GTCGCTTACG TTTACGGCCT
ATTTTAATGA CCTCGATAGC CTTCATTATG GGTGTGGTAC CTATGGTTTT TTCTAGCGGA
CCTGGTTCAG AAATGCGTCA AGCAATGGGT GTTGCAGTAT TCTCTGGCAT GATTGGGGTG
ACTATTTTTG GCCTTATATT AACGCCACTG TTTTATTATG CCCTAGCAAA ACGTGGGAAA
AATAAAACCG AGCTCGCCGA ATCGGCCATA ACACACGATT AA
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| Protein sequence | MLSQFFIKRP IFAAVLSLLF FISGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKIIAE
TVASPLEQEI NGVENMLYMS SQATSDGRMT LTITFAIGTD VDLAQTQVQS RVERAKPRLP
EEVQRLGIVT EKSSPSLTMV VHLTSPDDRY DMLYLSNYAV LKVKDELARI TGVGAVRVFG
AGDYSMRVWL DPNKVAAIGL SPSNIVAAIR EQNQQAAAGS LGAQPSGDSD FQLLINVKGR
LSNVEEFEDI IVKVGDQGQI TRLKDVARVE LGASTYALRS MLDNKDAAAL PVFQASGSNA
IQISDDVRSK MAELSKSFPE GLTYDIVYDP TVFVRGSIKA VVQTLVEALL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLMGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
ISDGLSPVAA TQKAMKEVTG PIIATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKGH HEKKDMLTRG MDKLLGGWLF NPFNRMFARM SNGYGWLVKK
IIRFGAVIGI LYIGLVGLTG LQFANTPTGY VPGQDKQYLI AFAQLPDAAS LDRTEAIVKE
MSRIALDQPG VAHAVAFPGL SINGFTNSTN SAILFTPLDD FADRKDPSLS AGAIAAALNQ
KFASINGAFI AIFPPPPVQG LGTIGGFRLQ IQDRANYGYE ELYKVTMQVM QKAWATPELA
GVFSSYQVNV PQLEVNIDRT KAKQQSVSLD ELFSTLQGYM GSVYANDFNQ FGRTYQVNVQ
ADEQFRQTPE QIAQLKVRNN QGEMVPIGSF INVTNSSGPD RVMHYNGFTT AELNGGAAPG
FSSGEAQAAI EKILAETLPN GMTYEWTEIT YQQILAGNAG AYIYPLIILL VFMVLAAQYE
SLSLPIAIIL IIPMTLLSAL TGVLIYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKELQ
DDGMEPLEAI LEAGRLRLRP ILMTSIAFIM GVVPMVFSSG PGSEMRQAMG VAVFSGMIGV
TIFGLILTPL FYYALAKRGK NKTELAESAI THD
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