| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3935 |
|---|
| Symbol | |
|---|
| ID | 4280826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4695360 |
|---|
| End bp | 4696088 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136756 |
|---|
| Product | 3-deoxy-D-manno-octulosonic-acid kinase |
|---|
| Protein accession | YP_752599 |
|---|
| Protein GI | 114565085 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0478] RIO-like serine/threonine protein kinase fused to N-terminal HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0314402 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATAA AAAACACCCA ACTTGGCCAT ATTGCATGGT GTGAAACCAC TGCCCAACAC
ATAGCACCGC AAGACTTCGC GGTTGATGGT TGGCGAGAAA AAAATGCAGT GGTGGGTCAG
TCCAAAGGCC GTTACACCAC ATGGTTTGTC AAAACCGATA ACTCGGACAG CCCGCAAACA
TGGGTGTTAC GCCATTATTG GCGCGGTGGA ATGATGGAAA AATTCAGCCG AGATGCCTAC
TTCTATACCG GCCTACAACG AACCCGTGCT GTGGCAGAGT TAGCGATCCT TGAAGTTTTG
TATCAAGAAG GATTTGCGGT TCCACGCCCT ATTGCGGCGA ATGTTGAACG TTTTGGTTTA
TGGTATCGAG CCGATATAAT TATTGAACAT GTTGCTGGAG CAAATGATTT AGTGGCTTAC
TTAAGCCATA ACCCAATGAC AGAATCGCAA TGGTATTTAT TAGGCGAAAC CATTGCCAAA
TTTCATCAGC GTGGGGTATA TCACGCCGAT TTAAATGCCA AAAACATCTT ACTGGCACAT
GGGGAATTCT ATTTGATTGA TTTTGATCGA GGCGAATTAC GTACACCACA GCCTACATGG
CAACAAGCCA ATTTAGACCG CTTGCTACGT TCTTTTAACA AAGAGCACGC TAAACTGACT
ACGCTGCAAT TTAGTCAACA GCATTGGCTG CAATTACTTG CAGGTTATCA AAGCATCAAC
CCAATCTAA
|
|---|
| Protein sequence | MQIKNTQLGH IAWCETTAQH IAPQDFAVDG WREKNAVVGQ SKGRYTTWFV KTDNSDSPQT
WVLRHYWRGG MMEKFSRDAY FYTGLQRTRA VAELAILEVL YQEGFAVPRP IAANVERFGL
WYRADIIIEH VAGANDLVAY LSHNPMTESQ WYLLGETIAK FHQRGVYHAD LNAKNILLAH
GEFYLIDFDR GELRTPQPTW QQANLDRLLR SFNKEHAKLT TLQFSQQHWL QLLAGYQSIN
PI
|
|---|
| |