Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3565 |
Symbol | |
ID | 4280458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4233543 |
End bp | 4235594 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638136377 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_752231 |
Protein GI | 114564717 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.274322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGATC CAACCCAAAT TAACGAACCA GAGCAAGGCT TAAGTGCCGA TACTCGCAAC TGGCCAAAAG CCTTGTTTGC AGTAGCATTG ATTTTTTCTA TTTTCCAAAT TACCACCGCG GCATTTCATC CAGTTTCGAC ACAAGTATTG CGCGCCGTAC ACGTGGGCTT TTTATTATTA GTGGTGTTTA TTAGCTACCC AGGTATAGGC AAGAGTCAGC CATGGCAACC TTTGGCATGG ATACTCGGTT TAGCGGGTAT GGCTACCGCG GTTTATCAAT GGGTGTTCGA AGCAGACTTA ATTCAACGTT CTGGTGATTT AACCCAAAAT GACATGATTA TTGGTGTGGT GTTAGTCGCT TTAGTGTTTG AAGCCGCAAG ACGAGTGATG GGAATAGCCC TGCCGATTAT TTGTGGTATT TTTTTGGCCT ATGGTTTATT TGGCGAGTAT TTACCCGGTG AATTGATGCA TCGAGGTTAT GGTTTCGATC AAATAGTTAA CCAGTTGGCC TTTGGTACCG AAGGCTTATA TGGCACGCCA ACTTATGTAT CCGCGACCTA TATTTTCTTG TTTATTCTGT TTGGTGCCTT TTTAGAGCAA GCAGGCATGA TCCGCTTATT TACCGACTTT GCTATGGGCT TATTTGGCCA TAAAGTGGGT GGGCCTGCAA AAGTGTCGGT GGTGTCTTCA GCACTCATGG GCACCATTAC CGGTTCGGGA GTTGCCAATG TGGTCACCAC CGGCCAGTTT ACTATTCCGT TAATGAAGCG CTTTGGTTAT CGGTCTGCTT TTGCGGGTGG GGTAGAAGCC ACATCCAGTA TGGGCAGCCA AATTATGCCG CCGATTATGG GCGCCGTGGC CTTTATTATG GCAGAAACCA TTAATGTGCA ATTTATTGAA ATTGCTAAAG CAGCGATGAT CCCCGCGGTA TTGTATTTTT GTTCGGTGTT CTGGATGGTG CATTTAGAAG CTAAACGCGC CAATTTATCT GGTTTACCTA AAGACCAATG TCCGGATCCG TGGGCAGCTA TTAAGTTGCG TTGGTACTTA TTAATTCCAC TATTTATTTT GATTGGTTTG TTATTTTCAG GTCGTACACC GCTGTTTTCT GGCATGGTTG GCTTAGCACT CACTGCGATT GTTATTTTAG GTTCGGCCAT TATTCTCAAT CTATCATCAG CTGCTATGCG GTTTGCTTTT TGGATAGCGC TAGGGGTGTT ATGTGCAGGA TTTTTCCAGT TAGGTATAGG GGTGATGTTT GGCGTTATCG CTATGCTGGT GGTGATTTGT TGGTTTGTTA AAGGTGGCAA AGAAACCCTA ACATTATGTG TGCATGCGTT AGTTGAAGGT GCGCGACATG CAGTACCTGT AGGTATTGCT TGTGCGCTAG TGGGCGTGAT TATTGGTGTT GTGTCACTAA CCGGTATTGC TTCAACGTTT GCCGGCTATA TTCTGGCTGT CGGCCAAGAT AACTTATTCT TGTCTTTAGT GCTGACGATG GTGACGTGTT TGGTATTAGG TATGGGGATC CCGACAATTC CTAATTACAT TATTACCAGC TCAATTGCCG CGCCAGCGTT ACTGGATTTA GGCGTACCGT TAATTGTGTC GCACATGTTT GTGTTTTATT TTGGCATTAT GGCAGACCTT ACACCACCCG TTGCCCTGGC GTGTTTCGCC GCGGCGCCAA TCGCCAAAGA GAAAGGCTTA AAAATCAGTT TATGGGCCAT TCGCATTGCC ATTGCTGGGT TTATTATTCC GTTTATGGCG GTGTACGACC CTGCGTTAAT GCTCCAAAGT GGTGGTGTGC TAGAAACGGT TTATGTGGTC CTTAAAGCGA CGGTTGCTAT AGGTATTTGG GGCGTGATAT TTACCGGCTA CTTATTACAA AACCTTTATT GGTGGGAACG TGTTTTAGGC TTTATTGCTG GTGGCAGTTT AATTATGGCG ACACCGCTAA GTGATGAGTT AGGCTTTGGT TTGGCACTGG TGTTTATTTT GCACCACGTA TGGCGAGCAC GTAAGCTAAA ACGTTTAGCG CAGGGCGAAT AA
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Protein sequence | MSDPTQINEP EQGLSADTRN WPKALFAVAL IFSIFQITTA AFHPVSTQVL RAVHVGFLLL VVFISYPGIG KSQPWQPLAW ILGLAGMATA VYQWVFEADL IQRSGDLTQN DMIIGVVLVA LVFEAARRVM GIALPIICGI FLAYGLFGEY LPGELMHRGY GFDQIVNQLA FGTEGLYGTP TYVSATYIFL FILFGAFLEQ AGMIRLFTDF AMGLFGHKVG GPAKVSVVSS ALMGTITGSG VANVVTTGQF TIPLMKRFGY RSAFAGGVEA TSSMGSQIMP PIMGAVAFIM AETINVQFIE IAKAAMIPAV LYFCSVFWMV HLEAKRANLS GLPKDQCPDP WAAIKLRWYL LIPLFILIGL LFSGRTPLFS GMVGLALTAI VILGSAIILN LSSAAMRFAF WIALGVLCAG FFQLGIGVMF GVIAMLVVIC WFVKGGKETL TLCVHALVEG ARHAVPVGIA CALVGVIIGV VSLTGIASTF AGYILAVGQD NLFLSLVLTM VTCLVLGMGI PTIPNYIITS SIAAPALLDL GVPLIVSHMF VFYFGIMADL TPPVALACFA AAPIAKEKGL KISLWAIRIA IAGFIIPFMA VYDPALMLQS GGVLETVYVV LKATVAIGIW GVIFTGYLLQ NLYWWERVLG FIAGGSLIMA TPLSDELGFG LALVFILHHV WRARKLKRLA QGE
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