| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3560 |
|---|
| Symbol | |
|---|
| ID | 4280453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4229982 |
|---|
| End bp | 4230443 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136372 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_752226 |
|---|
| Protein GI | 114564712 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2731] Beta-galactosidase, beta subunit |
|---|
| TIGRFAM ID | [TIGR00022] uncharacterized protein, YhcH/YjgK/YiaL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGTTG ATACTTTAGC AAATCGTCAC CTATACACTC AACTTAGCCC GAGATTAGCC
AAAGCATTAG CCCATCTCGC GGACACAGAC TTTAGCCAGC TTGAAGTGGG CAATTATCCG
CTTGAAGGCA AAGATATTTT CGTTATCGTT AATGACTATG AAACTAAGCC TAAAGAAATC
GAACCCTTTG AAGTTCATCA ACAGTATATT GATGTGCAGT ATGTGGTTAG CGGGGAAGAA
GAATTTGGCT ATTTACCGTT AGCCAATCAA ACACCTTCTA AGCCTTATTT TGACAAGCAT
GACTATGCTG AATACGGCTA TGAATCTAAC AAAGATGATG CGGCGTTTAT TCCGCTAAAA
GCGGGCATGT TTGCACTATT TTTCCCTGGC GACATCCATA TGCCAGGCAC CAGCCCAACA
CCACAAAAAG TTCGCAAAGT GGTGATAAAA GTACGGGTAT AA
|
|---|
| Protein sequence | MIVDTLANRH LYTQLSPRLA KALAHLADTD FSQLEVGNYP LEGKDIFVIV NDYETKPKEI
EPFEVHQQYI DVQYVVSGEE EFGYLPLANQ TPSKPYFDKH DYAEYGYESN KDDAAFIPLK
AGMFALFFPG DIHMPGTSPT PQKVRKVVIK VRV
|
|---|
| |